Metagenome Survey of a Multispecies and Alga-Associated Biofilm Revealed Key Elements of Bacterial-Algal Interactions in Photobioreactors

Exploiting Quorum Sensing To Confuse Bacterial Pathogens

(2013) B. LaSarre et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Algal biofuels questioned

(2013) Emily Waltz   NATURE BIOTECHNOLOGY

Thiamin biosynthesis: still yielding fascinating biological chemistry

(2012) Tadhg P. Begley et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

Irradiance optimization of outdoor microalgal cultures using solar tracked photobioreactors

(2012) Stefan Hindersin et al.   BIOPROCESS AND BIOSYSTEMS ENGINEERING

Eukaryotic and prokaryotic microbial communities during microalgal biomass production

(2012) Aino-Maija Lakaniemi et al.   BIORESOURCE TECHNOLOGY

Metagenome analyses of corroded concrete wastewater pipe biofilms reveal a complex microbial system

(2012) Vicente Gomez-Alvarez et al.   BMC MICROBIOLOGY

Metagenomics of microbial life in extreme temperature environments

(2012) Anna Lewin et al.   CURRENT OPINION IN BIOTECHNOLOGY

The role of planktonicFlavobacteriain processing algal organic matter in coastal East Antarctica revealed using metagenomics and metaproteomics

(2012) Timothy J. Williams et al.   ENVIRONMENTAL MICROBIOLOGY

Heterogeneity in Pseudomonas aeruginosa Biofilms Includes Expression of Ribosome Hibernation Factors in the Antibiotic-Tolerant Subpopulation and Hypoxia-Induced Stress Response in the Metabolically Active Population

(2012) K. S. Williamson et al.   JOURNAL OF BACTERIOLOGY

Growth of Dunaliella tertiolecta and associated bacteria in photobioreactors

(2012) Aino-Maija Lakaniemi et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Functional interactions between the gut microbiota and host metabolism

(2012) Valentina Tremaroli et al.   NATURE

Genomic approaches to studying the human microbiota

(2012) George M. Weinstock   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters

(2012) Akihiro Nakaya et al.   NUCLEIC ACIDS RESEARCH

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Vitamins in the sea

(2012) S. J. Giovannoni   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Community genomic analysis of an extremely acidophilic sulfur-oxidizing biofilm

(2011) Daniel S Jones et al.   ISME Journal

Insights into the Evolution of Vitamin B12 Auxotrophy from Sequenced Algal Genomes

(2011) K. E. Helliwell et al.   MOLECULAR BIOLOGY AND EVOLUTION

Closing in on complete pathways of biotin biosynthesis

(2011) Steven Lin et al.   Molecular BioSystems

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

(2011) R. Caspi et al.   NUCLEIC ACIDS RESEARCH

Bacterial community assembly based on functional genes rather than species

(2011) C. Burke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Growth of Chlorella vulgaris and associated bacteria in photobioreactors

(2011) Aino-Maija Lakaniemi et al.   Microbial Biotechnology

Microbial Metagenomics: Beyond the Genome

(2010) Jack A. Gilbert et al.   Annual Review of Marine Science

Metagenomic Analyses: Past and Future Trends

(2010) Carola Simon et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quorum Sensing in Gram-Negative Bacteria: Small-Molecule Modulation of AHL and AI-2 Quorum Sensing Pathways

(2010) Warren R. J. D. Galloway et al.   CHEMICAL REVIEWS

Biodiesel from algae: challenges and prospects

(2010) Stuart A Scott et al.   CURRENT OPINION IN BIOTECHNOLOGY

Microalgae as biodiesel & biomass feedstocks: Review & analysis of the biochemistry, energetics & economics

(2010) Peter J. le B. Williams et al.   Energy & Environmental Science

V-Xtractor: An open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences

(2010) Martin Hartmann et al.   JOURNAL OF MICROBIOLOGICAL METHODS

The biofilm matrix

(2010) Hans-Curt Flemming et al.   NATURE REVIEWS MICROBIOLOGY

Microbiome Profiling by Illumina Sequencing of Combinatorial Sequence-Tagged PCR Products

(2010) Gregory B. Gloor et al.   PLoS One

The Structural and Biochemical Foundations of Thiamin Biosynthesis

(2009) Christopher T. Jurgenson et al.   Annual Review of Biochemistry

Phylogenetic Diversity and Metabolic Potential Revealed in a Glacier Ice Metagenome

(2009) C. Simon et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Achievements and new knowledge unraveled by metagenomic approaches

(2009) Carola Simon et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Closed photo-bioreactors as tools for biofuel production

(2009) Florian Lehr et al.   CURRENT OPINION IN BIOTECHNOLOGY

Abundant transposases encoded by the metagenome of a hydrothermal chimney biofilm

(2009) William J Brazelton et al.   ISME Journal

The developmental model of microbial biofilms: ten years of a paradigm up for review

(2009) Russell D. Monds et al.   TRENDS IN MICROBIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Presence of previously undescribed bacterial taxa in non-axenic Chlorella cultures

(2008) Shigeto Otsuka et al.   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

Global Sequencing: A Review of Current Molecular Data and New Methods Available to Assess Microbial Diversity

(2008) Richard Christen   MICROBES AND ENVIRONMENTS

Physiological heterogeneity in biofilms

(2008) Philip S. Stewart et al.   NATURE REVIEWS MICROBIOLOGY

Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing

(2008) Susan M. Huse et al.   PLoS Genetics

Photobioreactors for mass cultivation of algae

(2007) C.U. Ugwu et al.   BIORESOURCE TECHNOLOGY