Plant growth and oil contamination alter the diversity and composition of bacterial communities in agricultural soils across China

Temporal dynamics of microbial communities in microcosms in response to pollutants

(2017) Shuo Jiao et al.   MOLECULAR ECOLOGY

Spatial Shifts in Soil Microbial Activity and Degradation of Pasture Cover Caused by Prolonged Exposure to Cement Dust

(2016) Fuensanta Caravaca et al.   LAND DEGRADATION & DEVELOPMENT

Bacterial communities in oil contaminated soils: Biogeography and co-occurrence patterns

(2016) Shuo Jiao et al.   SOIL BIOLOGY & BIOCHEMISTRY

Long-Term Oil Contamination Alters the Molecular Ecological Networks of Soil Microbial Functional Genes

(2016) Yuting Liang et al.   Frontiers in Microbiology

Microbial succession in response to pollutants in batch-enrichment culture

(2016) Shuo Jiao et al.   Scientific Reports

Bacterial biogeography in the coastal waters of northern Zhejiang, East China Sea is highly controlled by spatially structured environmental gradients

(2015) Kai Wang et al.   ENVIRONMENTAL MICROBIOLOGY

Monitoring of polycyclic aromatic hydrocarbons on agricultural lands surrounding Tehran oil refinery

(2015) J. Bayat et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Erythrobacter atlanticus sp. nov., a bacterium from ocean sediment able to degrade polycyclic aromatic hydrocarbons

(2015) Lingping Zhuang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Long-term soil transplant simulating climate change with latitude significantly alters microbial temporal turnover

(2015) Yuting Liang et al.   ISME Journal

Depth Distribution of Soil Organic Carbon Fractions in Relation to Tillage and Cropping Sequences in Some Dry Lands of Punjab, Pakistan

(2015) Asma Hassan et al.   LAND DEGRADATION & DEVELOPMENT

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons

(2015) Shengjing Shi et al.   mBio

Effects of growth stage and fulvic acid on the diversity and dynamics of endophytic bacterial community in Stevia rebaudiana Bertoni leaves

(2015) Xuejian Yu et al.   Frontiers in Microbiology

Farm management, not soil microbial diversity, controls nutrient loss from smallholder tropical agriculture

(2015) Stephen A. Wood et al.   Frontiers in Microbiology

Biogeography of the Sediment Bacterial Community Responds to a Nitrogen Pollution Gradient in the East China Sea

(2014) Jinbo Xiong et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fine-scale spatial patterns in bacterial community composition and function within freshwater ponds

(2014) Gavin Lear et al.   ISME Journal

Taxonomical and functional microbial community selection in soybean rhizosphere

(2014) Lucas W Mendes et al.   ISME Journal

Dynamics of bacterial community succession in a salt marsh chronosequence: evidences for temporal niche partitioning

(2014) Francisco Dini-Andreote et al.   ISME Journal

Microbial mediation of biogeochemical cycles revealed by simulation of global changes with soil transplant and cropping

(2014) Mengxin Zhao et al.   ISME Journal

Distinct soil microbial diversity under long-term organic and conventional farming

(2014) Martin Hartmann et al.   ISME Journal

Pathogens and insect herbivores drive rainforest plant diversity and composition

(2014) Robert Bagchi et al.   NATURE

Phthalic Acid Esters in Soils from Vegetable Greenhouses in Shandong Peninsula, East China

(2014) Chao Chai et al.   PLoS One

Soil biodiversity and soil community composition determine ecosystem multifunctionality

(2014) C. Wagg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rhizosphere microbiome assemblage is affected by plant development

(2013) Jacqueline M Chaparro et al.   ISME Journal

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Turnover of soil bacterial diversity driven by wide-scale environmental heterogeneity

(2013) L. Ranjard et al.   Nature Communications

Genome Sequence and Mutational Analysis of Plant-Growth-Promoting Bacterium Agrobacterium tumefaciens CCNWGS0286 Isolated from a Zinc-Lead Mine Tailing

(2012) Xiuli Hao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Impact of Long-Term Diesel Contamination on Soil Microbial Community Structure

(2012) Nora B. Sutton et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Application of targeted metagenomics to explore abundance and diversity of CO2-fixing bacterial community using cbbL gene from the rhizosphere of Arachis hypogaea

(2012) Basit Yousuf et al.   GENE

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Thaxtomin A-deficient endophytic Streptomyces sp. enhances plant disease resistance to pathogenic Streptomyces scabies

(2012) Lan Lin et al.   PLANTA

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

The bacterial biogeography of British soils

(2011) Robert I. Griffiths et al.   ENVIRONMENTAL MICROBIOLOGY

Disentangling the importance of ecological niches from stochastic processes across scales

(2011) J. M. Chase et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Drivers of bacterial  -diversity depend on spatial scale

(2011) J. B. H. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Nitrogen-fixing legume tree species for the reclamation of severely degraded lands in Brazil

(2011) G. M. Chaer et al.   TREE PHYSIOLOGY

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Biodegradation of Benazolin-Ethyl by Strain Methyloversatilis sp. cd-1 Isolated from Activated Sludge

(2010) Tianming Cai et al.   CURRENT MICROBIOLOGY

Effects of soil biota from different ranges onRobiniainvasion: acquiring mutualists and escaping pathogens

(2010) Ragan M. Callaway et al.   ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stable Isotope Probing Identifies Novel m-Xylene Degraders in Soil Microcosms from Contaminated and Uncontaminated Sites

(2010) Shuguang Xie et al.   WATER AIR AND SOIL POLLUTION

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Partitioning beta diversity in a subtropical broad-leaved forest of China

(2009) Pierre Legendre et al.   ECOLOGY

Cyanobacterial diversity in the rhizosphere of rice and its ecological significance

(2009) Radha Prasanna et al.   INDIAN JOURNAL OF MICROBIOLOGY

Relative roles of niche and neutral processes in structuring a soil microbial community

(2009) Alex J Dumbrell et al.   ISME Journal

“In situ” phytostabilisation of heavy metal polluted soils using Lupinus luteus inoculated with metal resistant plant-growth promoting rhizobacteria

(2009) M. Dary et al.   JOURNAL OF HAZARDOUS MATERIALS

Regulation and function of root exudates

(2009) DAYAKAR V. BADRI et al.   PLANT CELL AND ENVIRONMENT

FORWARD SELECTION OF EXPLANATORY VARIABLES

(2008) F. Guillaume Blanchet et al.   ECOLOGY

Amphibian Chemical Defense: Antifungal Metabolites of the Microsymbiont Janthinobacterium lividum on the Salamander Plethodon cinereus

(2008) Robert M. Brucker et al.   JOURNAL OF CHEMICAL ECOLOGY

Endophytic Actinobacteria Induce Defense Pathways inArabidopsis thaliana

(2008) V. M. Conn et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Nitrogen-fixing bacteria associated with leguminous and non-leguminous plants

(2008) Claudine Franche et al.   PLANT AND SOIL

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE