Temporal dynamics of microbial communities in microcosms in response to pollutants

Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China

(2016) Bin Ma et al.   ISME Journal

Microbial succession in response to pollutants in batch-enrichment culture

(2016) Shuo Jiao et al.   Scientific Reports

Genome sequencing reveals mechanisms for heavy metal resistance and polycyclic aromatic hydrocarbon degradation in Delftia lacustris strain LZ-C

(2015) Wenyang Wu et al.   ECOTOXICOLOGY

Biodegradation of PAHs by Acinetobacter isolated from karst groundwater in a coal-mining area

(2015) Yixian Shao et al.   Environmental Earth Sciences

Determinants of bacterial communities in Canadian agroforestry systems

(2015) Samiran Banerjee et al.   ENVIRONMENTAL MICROBIOLOGY

Oil Biodegradation and Oil-Degrading Microbial Populations in Marsh Sediments Impacted by Oil from the Deepwater Horizon Well Blowout

(2015) Ronald M. Atlas et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Long-term soil transplant simulating climate change with latitude significantly alters microbial temporal turnover

(2015) Yuting Liang et al.   ISME Journal

Effects of growth stage and fulvic acid on the diversity and dynamics of endophytic bacterial community in Stevia rebaudiana Bertoni leaves

(2015) Xuejian Yu et al.   Frontiers in Microbiology

Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series

(2014) M. J. Nueda et al.   BIOINFORMATICS

‘Rare biosphere’ bacteria as key phenanthrene degraders in coastal seawaters

(2014) Caroline Sauret et al.   ENVIRONMENTAL POLLUTION

Biosurfactant produced by novel Pseudomonas sp. WJ6 with biodegradation of n-alkanes and polycyclic aromatic hydrocarbons

(2014) Wenjie Xia et al.   JOURNAL OF HAZARDOUS MATERIALS

Proteomic Characterization of Plasmid pLA1 for Biodegradation of Polycyclic Aromatic Hydrocarbons in the Marine Bacterium, Novosphingobium pentaromativorans US6-1

(2014) Sung Ho Yun et al.   PLoS One

Conditionally Rare Taxa Disproportionately Contribute to Temporal Changes in Microbial Diversity

(2014) A. Shade et al.   mBio

Beta diversity of marine bacteria depends on temporal scale

(2013) Stephen M. Hatosy et al.   ECOLOGY

Alkane-degrading bacteria at the soil-litter interface: comparing isolates with T-RFLP-based community profiles

(2013) Julia Giebler et al.   FEMS MICROBIOLOGY ECOLOGY

A meta-analysis of changes in bacterial and archaeal communities with time

(2013) Ashley Shade et al.   ISME Journal

Modular community structure suggests metabolic plasticity during the transition to polar night in ice-covered Antarctic lakes

(2013) Trista J Vick-Majors et al.   ISME Journal

Contrasting primary successional trajectories of fungi and bacteria in retreating glacier soils

(2013) Shawn P. Brown et al.   MOLECULAR ECOLOGY

Hexadecane-degradation by Teskumurella and Stenotrophomonas Strains Isolated From Hydrocarbon Contaminated Soils

(2013) Hamid Tebyanian et al.   Jundishapur Journal of Microbiology

Changes in Phenolic Compounds and Cellular Ultrastructure of Arctic and Antarctic Strains of Zygnema (Zygnematophyceae, Streptophyta) after Exposure to Experimentally Enhanced UV to PAR Ratio

(2012) Martina Pichrtová et al.   MICROBIAL ECOLOGY

Effect of Genetically Modified Poplars on Soil Microbial Communities during the Phytoremediation of Waste Mine Tailings

(2011) Moonsuk Hur et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterizing microbial communities through space and time

(2011) Antonio Gonzalez et al.   CURRENT OPINION IN BIOTECHNOLOGY

Multivariate analysis of mixed contaminants (PAHs and heavy metals) at manufactured gas plant site soils

(2011) Palanisami Thavamani et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Ecological inference on bacterial succession using curve-based community fingerprint data analysis, demonstrated with rhizoremediation experiment

(2011) Anu Mikkonen et al.   FEMS MICROBIOLOGY ECOLOGY

The Western English Channel contains a persistent microbial seed bank

(2011) J Gregory Caporaso et al.   ISME Journal

Defining seasonal marine microbial community dynamics

(2011) Jack A Gilbert et al.   ISME Journal

Coherent dynamics and association networks among lake bacterioplankton taxa

(2011) Alexander Eiler et al.   ISME Journal

Succession of bacterial community along with the removal of heavy crude oil pollutants by multiple biostimulation treatments in the Yellow River Delta, China

(2011) Sulin Yu et al.   JOURNAL OF ENVIRONMENTAL SCIENCES

Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease

(2011) S. Greenblum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

A quantitative analysis of temporal turnover in aquatic species assemblages across ecosystems

(2010) Jenni J. Korhonen et al.   ECOLOGY

A genomic diagnostic tool for human endometrial receptivity based on the transcriptomic signature

(2010) Patricia Díaz-Gimeno et al.   FERTILITY AND STERILITY

A ‘rare biosphere’ microorganism contributes to sulfate reduction in a peatland

(2010) Michael Pester et al.   ISME Journal

Microorganisms and climate change: terrestrial feedbacks and mitigation options

(2010) Brajesh K. Singh et al.   NATURE REVIEWS MICROBIOLOGY

Dormancy contributes to the maintenance of microbial diversity

(2010) S. E. Jones et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Succession of microbial consortia in the developing infant gut microbiome

(2010) J. E. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Changes through time: integrating microorganisms into the study of succession

(2010) Noah Fierer et al.   RESEARCH IN MICROBIOLOGY

The Discussion Goes on: What Is the Role ofEuryarchaeotain Humans?

(2010) H.-P. Horz et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

Bacterial Succession on the Leaf Surface: A Novel System for Studying Successional Dynamics

(2009) Amanda J. Redford et al.   MICROBIAL ECOLOGY

Ecology of the rare microbial biosphere of the Arctic Ocean

(2009) Pierre E. Galand et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Temporal scaling of bacterial taxa is influenced by both stochastic and deterministic ecological factors

(2008) Christopher J. Van Der Gast et al.   ENVIRONMENTAL MICROBIOLOGY

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE