Tracking a century of changes in microbial eukaryotic diversity in lakes driven by nutrient enrichment and climate warming

DNA-based methods in paleolimnology: new opportunities for investigating long-term dynamics of lacustrine biodiversity

(2017) Isabelle Domaizon et al.   JOURNAL OF PALEOLIMNOLOGY

Protist metabarcoding and environmental biomonitoring: Time for change

(2016) J. Pawlowski et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

Long-term dynamics in microbial eukaryotes communities: a palaeolimnological view based on sedimentary DNA

(2016) Eric Capo et al.   MOLECULAR ECOLOGY

Microbial eukaryote plankton communities of high-mountain lakes from three continents exhibit strong biogeographic patterns

(2016) Sabine Filker et al.   MOLECULAR ECOLOGY

Ciliate Diversity, Community Structure, and Novel Taxa in Lakes of the McMurdo Dry Valleys, Antarctica

(2016) Yuan Xu et al.   BIOLOGICAL BULLETIN

A spatiotemporal investigation of varved sediments highlights the dynamics of hypolimnetic hypoxia in a large hard-water lake over the last 150 years

(2016) Jean-Philippe Jenny et al.   LIMNOLOGY AND OCEANOGRAPHY

Marked seasonality and high spatial variability of protist communities in shallow freshwater systems

(2015) Marianne Simon et al.   ISME Journal

Origin, dynamics, and implications of extracellular DNA pools in marine sediments

(2015) Andrea Torti et al.   Marine Genomics

Is Planktonic Diversity Well Recorded in Sedimentary DNA? Toward the Reconstruction of Past Protistan Diversity

(2015) Eric Capo et al.   MICROBIAL ECOLOGY

Seasonal diversity and dynamics of haptophytes in the Skagerrak, Norway, explored by high-throughput sequencing

(2015) Elianne Sirnaes Egge et al.   MOLECULAR ECOLOGY

Evidence for an active rare biosphere within freshwater protists community

(2015) Didier Debroas et al.   MOLECULAR ECOLOGY

Accurate multiplexing and filtering for high-throughput amplicon-sequencing

(2015) Philippe Esling et al.   NUCLEIC ACIDS RESEARCH

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Determinants of community structure in the global plankton interactome

(2015) G. Lima-Mendez et al.   SCIENCE

Preservation potential of ancient plankton DNA in Pleistocene marine sediments

(2015) A. C. BOERE et al.   Geobiology

AmpliconDuo: A Split-Sample Filtering Protocol for High-Throughput Amplicon Sequencing of Microbial Communities

(2015) Anja Lange et al.   PLoS One

Protistan diversity in a permanently stratified meromictic lake (Lake Alatsee, SW Germany)

(2014) Andreas Oikonomou et al.   ENVIRONMENTAL MICROBIOLOGY

Sensitivity and responses of diatoms to climate warming in lakes heavily influenced by humans

(2014) Vincent Berthon et al.   FRESHWATER BIOLOGY

Effects of nutrients and warming onPlanktothrixdynamics and diversity: a palaeolimnological view based on sedimentary DNA and RNA

(2014) Olga Savichtcheva et al.   FRESHWATER BIOLOGY

Inherited hypoxia: A new challenge for reoligotrophicated lakes under global warming

(2014) Jean-Philippe Jenny et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Effects of long-term differential fertilization on eukaryotic microbial communities in an arable soil: a multiple barcoding approach

(2014) Guillaume Lentendu et al.   MOLECULAR ECOLOGY

Impact of climate warming on European inland waters

(2014) Martin Dokulil   Inland Waters

Phytoplankton configuration in six deep lakes in the peri-Alpine region: are the key drivers related to eutrophication and climate?

(2013) Nicole Gallina et al.   AQUATIC ECOLOGY

Local forcings affect lake zooplankton vulnerability and response to climate warming

(2013) Benjamin Alric et al.   ECOLOGY

Functional groups of marine ciliated protozoa and their relationships to water quality

(2013) Yong Jiang et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Geographic distance and ecosystem size determine the distribution of smallest protists in lacustrine ecosystems

(2013) Cécile Lepère et al.   FEMS MICROBIOLOGY ECOLOGY

Modular community structure suggests metabolic plasticity during the transition to polar night in ice-covered Antarctic lakes

(2013) Trista J Vick-Majors et al.   ISME Journal

Robust estimation of microbial diversity in theory and in practice

(2013) Bart Haegeman et al.   ISME Journal

Chironomid assemblages in cores from multiple water depths reflect oxygen-driven changes in a deep French lake over the last 150 years

(2013) Victor Frossard et al.   JOURNAL OF PALEOLIMNOLOGY

The role of palaeolimnology in assessing eutrophication and its impact on lakes

(2013) Thomas A. Davidson et al.   JOURNAL OF PALEOLIMNOLOGY

Effects of growth condition on succession patterns in tropical phytoplankton assemblages subjected to experimental eutrophication

(2013) Elisa M. Soares et al.   JOURNAL OF PLANKTON RESEARCH

A review of allochthonous organic matter dynamics and metabolism in streams

(2013) Jennifer L. Tank et al.   JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY

The interaction between climate warming and eutrophication to promote cyanobacteria is dependent on trophic state and varies among taxa

(2013) Anna Rigosi et al.   LIMNOLOGY AND OCEANOGRAPHY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Phylogenetic Affiliation of SSU rRNA Genes Generated by Massively Parallel Sequencing: New Insights into the Freshwater Protist Diversity

(2013) Najwa Taib et al.   PLoS One

Evolution of the plankton paleome in the Black Sea from the Deglacial to Anthropocene

(2013) M. J. L. Coolen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Short-term dynamics of diversity patterns: evidence of continual reassembly within lacustrine small eukaryotes

(2012) Jean-François Mangot et al.   ENVIRONMENTAL MICROBIOLOGY

Plankton dynamics under different climatic conditions in space and time

(2012) LISETTE N. DE SENERPONT DOMIS et al.   FRESHWATER BIOLOGY

The effects of changing climate on microzooplankton grazing and community structure: drivers, predictions and knowledge gaps

(2012) David A. Caron et al.   JOURNAL OF PLANKTON RESEARCH

Harmful filamentous cyanobacteria favoured by reduced water turnover with lake warming

(2012) Thomas Posch et al.   Nature Climate Change

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

Quantitative PCR Enumeration of Total/Toxic Planktothrix rubescens and Total Cyanobacteria in Preserved DNA Isolated from Lake Sediments

(2011) Olga Savichtcheva et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Ancient DNA from lake sediments: Bridging the gap between paleoecology and genetics

(2011) Lynn L Anderson-Carpenter et al.   BMC EVOLUTIONARY BIOLOGY

Predicting the impact of changing nutrient load and temperature on the phytoplankton of England’s largest lake, Windermere

(2011) J. ALEX ELLIOTT   FRESHWATER BIOLOGY

Warmer climates boost cyanobacterial dominance in shallow lakes

(2011) Sarian Kosten et al.   GLOBAL CHANGE BIOLOGY

Marine bacterial, archaeal and protistan association networks reveal ecological linkages

(2011) Joshua A Steele et al.   ISME Journal

Lakes as sentinels of climate change

(2011) Rita Adrian et al.   LIMNOLOGY AND OCEANOGRAPHY

Deciphering the effect of climate change and separating the influence of confounding factors in sediment core records using additive models

(2011) Gavin L. Simpsona et al.   LIMNOLOGY AND OCEANOGRAPHY

Short term climate variability during “Roman Classical Period” in the eastern Mediterranean

(2011) Liang Chen et al.   QUATERNARY SCIENCE REVIEWS

Cogs in the endless machine: Lakes, climate change and nutrient cycles: A review

(2011) Brian Moss   SCIENCE OF THE TOTAL ENVIRONMENT

A global network of coexisting microbes from environmental and whole-genome sequence data

(2010) S. Chaffron et al.   GENOME RESEARCH

Perkinsozoa, a well-known marine protozoan flagellate parasite group, newly identified in lacustrine systems: a review

(2010) Jean-François Mangot et al.   HYDROBIOLOGIA

Our current understanding of lake ecosystem response to climate change: What have we really learned from the north temperate deep lakes?

(2010) Yuko Shimoda et al.   JOURNAL OF GREAT LAKES RESEARCH

A palaeolimnological meta-database for assessing the ecological status of lakes

(2010) Richard W. Battarbee et al.   JOURNAL OF PALEOLIMNOLOGY

Reconstruction of the recent history of a large deep prealpine lake (Lake Bourget, France) using subfossil chironomids, diatoms, and organic matter analysis: towards the definition of a lake-specific reference state

(2010) Laurent Millet et al.   JOURNAL OF PALEOLIMNOLOGY

Contrasting seasonal niche separation between rare and abundant taxa conceals the extent of protist diversity

(2010) VIOLA NOLTE et al.   MOLECULAR ECOLOGY

Sedimentological and geochemical records of past trophic state and hypolimnetic anoxia in large, hard-water Lake Bourget, French Alps

(2009) Charline Giguet-Covex et al.   JOURNAL OF PALEOLIMNOLOGY

Last Glacial to Holocene hydrology of the Marmara Sea inferred from a dinoflagellate cyst record

(2009) Laurent Londeix et al.   REVIEW OF PALAEOBOTANY AND PALYNOLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Protists are microbes too: a perspective

(2008) David A Caron et al.   ISME Journal

Damage and degradation rates of extracellular DNA in marine sediments: implications for the preservation of gene sequences

(2008) C. CORINALDESI et al.   MOLECULAR ECOLOGY

CLIMATE: Blooms Like It Hot

(2008) H. W. Paerl et al.   SCIENCE