Novel approach to functional SNPs discovery from genome-wide data reveals promising variants for colon cancer risk

A novel method for in silico identification of regulatory SNPs in human genome

(2017) Rong Li et al.   JOURNAL OF THEORETICAL BIOLOGY

Epigenetics in cancer: Fundamentals and Beyond

(2017) Subhankar Biswas et al.   PHARMACOLOGY & THERAPEUTICS

Reducing GWAS Complexity

(2016) Dennis J. Hazelett et al.   CELL CYCLE

MicroRNAs in colorectal carcinoma - from pathogenesis to therapy

(2016) Yudan Chi et al.   JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH

SNP2TFBS – a database of regulatory SNPs affecting predicted transcription factor binding site affinity

(2016) Sunil Kumar et al.   NUCLEIC ACIDS RESEARCH

Long Non-Coding RNAs As Potential Novel Prognostic Biomarkers in Colorectal Cancer

(2016) Ester Saus et al.   Frontiers in Genetics

METTL13 is downregulated in bladder carcinoma and suppresses cell proliferation, migration and invasion

(2016) Zhe Zhang et al.   Scientific Reports

Mutations in CHD2 cause defective association with active chromatin in chronic lymphocytic leukemia

(2015) D. Rodriguez et al.   BLOOD

Genetics and Genetic Biomarkers in Sporadic Colorectal Cancer

(2015) John M. Carethers et al.   GASTROENTEROLOGY

Vps4A functions as a tumor suppressor by regulating the secretion and uptake of exosomal microRNAs in human hepatoma cells

(2015) Jin-xing Wei et al.   HEPATOLOGY

Aberrant RNA splicing in cancer; expression changes and driver mutations of splicing factor genes

(2015) A Sveen et al.   ONCOGENE

Long Noncoding RNAs in Digestive System Malignancies: A Novel Class of Cancer Biomarkers and Therapeutic Targets?

(2015) Athina Kladi-Skandali et al.   Gastroenterology Research and Practice

Exome Sequencing: Current and Future Perspectives

(2015) Amanda Warr et al.   G3-Genes Genomes Genetics

Chromosome 7 gain and DNA hypermethylation at the HOXA10 locus are associated with expression of a stem cell related HOX-signature in glioblastoma

(2015) Sebastian Kurscheid et al.   GENOME BIOLOGY

Diagnostic Approach to Hereditary Colorectal Cancer Syndromes

(2015) Brandie Heald et al.   Clinics in Colon and Rectal Surgery

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The U4/U6 Recycling Factor SART3 Has Histone Chaperone Activity and Associates with USP15 to Regulate H2B Deubiquitination

(2014) Lindsey Long et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Mechanisms for U2AF to define 3′ splice sites and regulate alternative splicing in the human genome

(2014) Changwei Shao et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Single Nucleotide Polymorphisms Associated with Colorectal Cancer Susceptibility and Loss of Heterozygosity in a Taiwanese Population

(2014) Chih-Yung Yang et al.   PLoS One

New genes emerging for colorectal cancer predisposition

(2014) Clara Esteban-Jurado   WORLD JOURNAL OF GASTROENTEROLOGY

The RNAissance family: SR proteins as multifaceted regulators of gene expression

(2014) Jonathan M. Howard et al.   Wiley Interdisciplinary Reviews-RNA

Sources of bias in measures of allele-specific expression derived from RNA-seq data aligned to a single reference genome

(2013) Kraig R Stevenson et al.   BMC GENOMICS

Familial Colorectal Cancer, Beyond Lynch Syndrome

(2013) Elena M. Stoffel et al.   Clinical Gastroenterology and Hepatology

GWAS Central: a comprehensive resource for the comparison and interrogation of genome-wide association studies

(2013) Tim Beck et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Regulatory crosstalk between Hox genes and miRNAs during angiogenesis

(2013) Elahe Mahdipour   MICROVASCULAR RESEARCH

Detection of Regulatory SNPs in Human Genome Using ChIP-seq ENCODE Data

(2013) Leonid O. Bryzgalov et al.   PLoS One

Comprehensive identification of mutational cancer driver genes across 12 tumor types

(2013) David Tamborero et al.   Scientific Reports

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Simultaneous SNP identification and assessment of allele-specific bias from ChIP-seq data

(2012) Yunyun Ni et al.   BMC GENETICS

Exosomes Mediate Stromal Mobilization of Autocrine Wnt-PCP Signaling in Breast Cancer Cell Migration

(2012) Valbona Luga et al.   CELL

Effects of sequence variation on differential allelic transcription factor occupancy and gene expression

(2012) T. E. Reddy et al.   GENOME RESEARCH

Recurrent R-spondin fusions in colon cancer

(2012) Somasekar Seshagiri et al.   NATURE

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

Melanoma exosomes educate bone marrow progenitor cells toward a pro-metastatic phenotype through MET

(2012) Héctor Peinado et al.   NATURE MEDICINE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Inherited Colorectal Cancer Syndromes

(2011) Fay Kastrinos et al.   CANCER JOURNAL

Genetics, Cytogenetics, and Epigenetics of Colorectal Cancer

(2011) Lucia Migliore et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

International network of cancer genome projects

(2010) Thomas J. Hudson (Chairperson) et al.   NATURE