Effective automated pipeline for 3D reconstruction of synapses based on deep learning

Faster R-CNN: Towards Real-Time Object Detection with Region Proposal Networks

(2017) Shaoqing Ren et al.   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE

Large scale three-dimensional reconstruction of an entire Caenorhabditis elegans larva using AutoCUTS-SEM

(2017) Xixia Li et al.   JOURNAL OF STRUCTURAL BIOLOGY

Multicut brings automated neurite segmentation closer to human performance

(2017) Thorsten Beier et al.   NATURE METHODS

Automated synaptic connectivity inference for volume electron microscopy

(2017) Sven Dorkenwald et al.   NATURE METHODS

SynEM, automated synapse detection for connectomics

(2017) Benedikt Staffler et al.   eLife

Selective synaptic remodeling of amygdalocortical connections associated with fear memory

(2016) Yang Yang et al.   NATURE NEUROSCIENCE

Saturated Reconstruction of a Volume of Neocortex

(2015) Narayanan Kasthuri et al.   CELL

Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks

(2014) Anna Kreshuk et al.   PLoS One

A high-throughput framework to detect synapses in electron microscopy images

(2013) S. Navlakha et al.   BIOINFORMATICS

Learning Context Cues for Synapse Segmentation

(2013) Carlos Becker et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Connectomic reconstruction of the inner plexiform layer in the mouse retina

(2013) Moritz Helmstaedter et al.   NATURE

Synapse classification and localization in Electron Micrographs

(2013) Vignesh Jagadeesh et al.   PATTERN RECOGNITION LETTERS

High-throughput Computer Method for 3D Neuronal Structure Reconstruction from the Image Stack of the Drosophila Brain and Its Applications

(2012) Ping-Chang Lee et al.   PLoS Computational Biology

Supervoxel-Based Segmentation of Mitochondria in EM Image Stacks With Learned Shape Features

(2011) A. Lucchi et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Wiring specificity in the direction-selectivity circuit of the retina

(2011) Kevin L. Briggman et al.   NATURE

A high-level 3D visualization API for Java and ImageJ

(2010) Benjamin Schmid et al.   BMC BIOINFORMATICS

Ultrastructural Analysis of Hippocampal Neuropil from the Connectomics Perspective

(2010) Yuriy Mishchenko et al.   NEURON

Serial Section Scanning Electron Microscopy of Adult Brain Tissue Using Focused Ion Beam Milling

(2008) G. Knott et al.   JOURNAL OF NEUROSCIENCE

Experience leaves a lasting structural trace in cortical circuits

(2008) Sonja B. Hofer et al.   NATURE