Automated synaptic connectivity inference for volume electron microscopy

Dense EM-based reconstruction of the interglomerular projectome in the zebrafish olfactory bulb

(2016) Adrian A Wanner et al.   NATURE NEUROSCIENCE

A Fast Method for the Segmentation of Synaptic Junctions and Mitochondria in Serial Electron Microscopic Images of the Brain

(2016) Pablo Márquez Neila et al.   NEUROINFORMATICS

Focal expression of mutant huntingtin in the songbird basal ganglia disrupts cortico-basal ganglia networks and vocal sequences

(2016) Masashi Tanaka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Saturated Reconstruction of a Volume of Neocortex

(2015) Narayanan Kasthuri et al.   CELL

High-resolution whole-brain staining for electron microscopic circuit reconstruction

(2015) Shawn Mikula et al.   NATURE METHODS

SegEM: Efficient Image Analysis for High-Resolution Connectomics

(2015) Manuel Berning et al.   NEURON

Synaptic circuits and their variations within different columns in the visual system ofDrosophila

(2015) Shin-ya Takemura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Automatic discovery of cell types and microcircuitry from neural connectomics

(2015) Eric Jonas et al.   eLife

Extracellular space preservation aids the connectomic analysis of neural circuits

(2015) Marta Pallotto et al.   eLife

Space–time wiring specificity supports direction selectivity in the retina

(2014) Jinseop S. Kim et al.   NATURE

Automated Detection of Synapses in Serial Section Transmission Electron Microscopy Image Stacks

(2014) Anna Kreshuk et al.   PLoS One

A workflow for the automatic segmentation of organelles in electron microscopy image stacks

(2014) Alex J. Perez et al.   Frontiers in Neuroanatomy

Learning Context Cues for Synapse Segmentation

(2013) Carlos Becker et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

A visual motion detection circuit suggested by Drosophila connectomics

(2013) Shin-ya Takemura et al.   NATURE

Connectomic reconstruction of the inner plexiform layer in the mouse retina

(2013) Moritz Helmstaedter et al.   NATURE

Whole-brain functional imaging at cellular resolution using light-sheet microscopy

(2013) Misha B Ahrens et al.   NATURE METHODS

Volume electron microscopy for neuronal circuit reconstruction

(2011) Kevin L Briggman et al.   CURRENT OPINION IN NEUROBIOLOGY

Wiring specificity in the direction-selectivity circuit of the retina

(2011) Kevin L. Briggman et al.   NATURE

High-accuracy neurite reconstruction for high-throughput neuroanatomy

(2011) Moritz Helmstaedter et al.   NATURE NEUROSCIENCE

Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images

(2011) Anna Kreshuk et al.   PLoS One

Singing-Related Neural Activity Distinguishes Four Classes of Putative Striatal Neurons in the Songbird Basal Ganglia

(2010) Jesse H. Goldberg et al.   JOURNAL OF NEUROPHYSIOLOGY

Singing-Related Neural Activity Distinguishes Two Putative Pallidal Cell Types in the Songbird Basal Ganglia: Comparison to the Primate Internal and External Pallidal Segments

(2010) J. H. Goldberg et al.   JOURNAL OF NEUROSCIENCE

Monitoring neural activity with bioluminescence during natural behavior

(2010) Eva A Naumann et al.   NATURE NEUROSCIENCE

Millisecond Timescale Disinhibition Mediates Fast Information Transmission through an Avian Basal Ganglia Loop

(2009) A. Leblois et al.   JOURNAL OF NEUROSCIENCE

Convolutional Networks Can Learn to Generate Affinity Graphs for Image Segmentation

(2009) Srinivas C. Turaga et al.   NEURAL COMPUTATION