CEMiTool: a Bioconductor package for performing comprehensive modular co-expression analyses

diceR: an R package for class discovery using an ensemble driven approach

(2018) Derek S. Chiu et al.   BMC BIOINFORMATICS

GeNET: a web application to explore and share Gene Co-expression Network Analysis data

(2017) Amit P. Desai et al.   PeerJ

Protozoan Parasites and Type I IFNs

(2017) Sasha Silva-Barrios et al.   Frontiers in Immunology

Weighted gene co-expression network analysis identifies specific modules and hub genes related to coronary artery disease

(2016) Jing Liu et al.   BMC Cardiovascular Disorders

petal: Co-expression network modelling in R

(2016) Juli Petereit et al.   BMC Systems Biology

DINGO: differential network analysis in genomics

(2015) Min Jin Ha et al.   BIOINFORMATICS

Guidance for RNA-seq co-expression network construction and analysis: safety in numbers

(2015) S. Ballouz et al.   BIOINFORMATICS

Transcriptional landscape of psoriasis identifies the involvement of IL36 and IL36RN

(2015) Maris Keermann et al.   BMC GENOMICS

Analysis of long non-coding RNAs highlights tissue-specific expression patterns and epigenetic profiles in normal and psoriatic skin

(2015) Lam C Tsoi et al.   GENOME BIOLOGY

Transcriptome-Based Network Analysis Reveals a Spectrum Model of Human Macrophage Activation

(2014) Jia Xue et al.   IMMUNITY

Extensive Psoriasis Induced by Pegylated Interferon Alfa-2a and Ribavirin in the Treatment of Chronic Hepatitis C

(2013) Gun-Wook Kim et al.   Annals of Dermatology

Sequential Waves of Gene Expression in Patients with Clinically Defined Dengue Illnesses Reveal Subtle Disease Phases and Predict Disease Severity

(2013) Peifang Sun et al.   PLoS Neglected Tropical Diseases

Induction and exacerbation of psoriasis with Interferon-alpha therapy for hepatitis C: A review and analysis of 36 cases

(2012) M. Afshar et al.   JOURNAL OF THE EUROPEAN ACADEMY OF DERMATOLOGY AND VENEREOLOGY

Gene-expression measurement: variance-modeling considerations for robust data analysis

(2012) Shankar Subramaniam et al.   NATURE IMMUNOLOGY

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

CoP: a database for characterizing co-expressed gene modules with biological information in plants

(2010) Y. Ogata et al.   BIOINFORMATICS

DiffCoEx: a simple and sensitive method to find differentially coexpressed gene modules

(2010) Bruno M Tesson et al.   BMC BIOINFORMATICS

Hematologic Changes in Visceral Leishmaniasis/Kala Azar

(2010) Neelam Varma et al.   INDIAN JOURNAL OF HEMATOLOGY AND BLOOD TRANSFUSION

The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function

(2010) David Warde-Farley et al.   NUCLEIC ACIDS RESEARCH

Reactome: a database of reactions, pathways and biological processes

(2010) D. Croft et al.   NUCLEIC ACIDS RESEARCH

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Variance stabilizing transformations of Poisson, binomial and negative binomial distributions

(2009) Guan Yu   STATISTICS & PROBABILITY LETTERS

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS