Bastion6: a bioinformatics approach for accurate prediction of type VI secreted effectors

PAAR-Rhs proteins harbor various C-terminal toxins to diversify the antibacterial pathways of type VI secretion systems

(2017) Jiale Ma et al.   ENVIRONMENTAL MICROBIOLOGY

Manganese scavenging and oxidative stress response mediated by type VI secretion system inBurkholderia thailandensis

(2017) Meiru Si et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Pseudomonas T6SS effector recruits PQS-containing outer membrane vesicles for iron acquisition

(2017) Jinshui Lin et al.   Nature Communications

SecretEPDB: a comprehensive web-based resource for secreted effector proteins of the bacterial types III, IV and VI secretion systems

(2017) Yi An et al.   Scientific Reports

Type VI Secretion Effectors: Methodologies and Biology

(2017) Yun-Wei Lien et al.   Frontiers in Cellular and Infection Microbiology

Accuratein silicoprediction of species-specific methylation sites based on information gain feature optimization

(2016) Ping-Ping Wen et al.   BIOINFORMATICS

Type VI Secretion System Substrates Are Transferred and Reused among Sister Cells

(2016) Andrea Vettiger et al.   CELL

A phospholipase A1 antibacterial Type VI secretion effector interacts directly with the C-terminal domain of the VgrG spike protein for delivery

(2016) Nicolas Flaugnatti et al.   MOLECULAR MICROBIOLOGY

VgrG C terminus confers the type VI effector transport specificity and is required for binding with PAAR and adaptor–effector complex

(2016) Devanand D. Bondage et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Aim, Load, Fire: The Type VI Secretion System, a Bacterial Nanoweapon

(2016) Francesca R. Cianfanelli et al.   TRENDS IN MICROBIOLOGY

Francisella tularensis IglG Belongs to a Novel Family of PAAR-Like T6SS Proteins and Harbors a Unique N-terminal Extension Required for Virulence

(2016) Mélanie Rigard et al.   PLoS Pathogens

protr/ProtrWeb: R package and web server for generating various numerical representation schemes of protein sequences

(2015) Nan Xiao et al.   BIOINFORMATICS

Identification of divergent type VI secretion effectors using a conserved chaperone domain

(2015) Xiaoye Liang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Secretome Analysis of Vibrio cholerae Type VI Secretion System Reveals a New Effector-Immunity Pair

(2015) Emrah Altindis et al.   mBio

New Players in the Toxin Field: Polymorphic Toxin Systems in Bacteria

(2015) Anne Jamet et al.   mBio

Type VI Secretion System Toxins Horizontally Shared between Marine Bacteria

(2015) Dor Salomon et al.   PLoS Pathogens

Scale-space measures for graph topology link protein network architecture to function

(2014) Marc Hulsman et al.   BIOINFORMATICS

DISOPRED3: precise disordered region predictions with annotated protein-binding activity

(2014) David T. Jones et al.   BIOINFORMATICS

Agrobacterium tumefaciens Deploys a Superfamily of Type VI Secretion DNase Effectors as Weapons for Interbacterial Competition In Planta

(2014) Lay-Sun Ma et al.   Cell Host & Microbe

Genetically distinct pathways guide effector export through the type VI secretion system

(2014) John C. Whitney et al.   MOLECULAR MICROBIOLOGY

Marker for type VI secretion system effectors

(2014) D. Salomon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Accurate prediction of bacterial type IV secreted effectors using amino acid composition and PSSM profiles

(2013) Lingyun Zou et al.   BIOINFORMATICS

A View to a Kill: The Bacterial Type VI Secretion System

(2013) Brian T. Ho et al.   Cell Host & Microbe

PPIevo : Protein–protein interaction prediction from PSSM based evolutionary information

(2013) Javad Zahiri et al.   GENOMICS

Lytic Activity of theVibrio choleraeType VI Secretion Toxin VgrG-3 Is Inhibited by the Antitoxin TsaB

(2013) Teresa M. Brooks et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

PAAR-repeat proteins sharpen and diversify the type VI secretion system spike

(2013) Mikhail M. Shneider et al.   NATURE

Identification of T6SS-dependent effector and immunity proteins by Tn-seq in Vibrio cholerae

(2013) T. G. Dong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rhs proteins from diverse bacteria mediate intercellular competition

(2013) S. Koskiniemi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Opportunistic Pathogen Serratia marcescens Utilizes Type VI Secretion To Target Bacterial Competitors

(2011) S. L. Murdoch et al.   JOURNAL OF BACTERIOLOGY

Prediction of protein structural class for low-similarity sequences using support vector machine and PSI-BLAST profile

(2010) Taigang Liu et al.   BIOCHIMIE

Sequence-based prediction of protein interaction sites with an integrative method

(2009) Xue-wen Chen et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Comparative genomic analysis uncovers 3 novel loci encoding type six secretion systems differentially distributed in Salmonella serotypes

(2009) Carlos J Blondel et al.   BMC GENOMICS

Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources?

(2009) Frédéric Boyer et al.   BMC GENOMICS

The type VI secretion system: translocation of effectors and effector-domains

(2009) Stefan Pukatzki et al.   CURRENT OPINION IN MICROBIOLOGY

Characterization and prediction of residues determining protein functional specificity

(2008) John A. Capra et al.   BIOINFORMATICS