Scale-space measures for graph topology link protein network architecture to function

Disentangling function from topology to infer the network properties of disease genes

(2013) Dario Ghersi et al.   BMC Systems Biology

Topology of molecular interaction networks

(2013) Wynand Winterbach et al.   BMC Systems Biology

Using networks to measure similarity between genes: association index selection

(2013) Juan I Fuxman Bass et al.   NATURE METHODS

Structural and Functional Brain Networks: From Connections to Cognition

(2013) H.-J. Park et al.   SCIENCE

Global network alignment using multiscale spectral signatures

(2012) R. Patro et al.   BIOINFORMATICS

Functional Overlap and Regulatory Links Shape Genetic Interactions between Signaling Pathways

(2010) Sake van Wageningen et al.   CELL

Generalized walks-based centrality measures for complex biological networks

(2010) Ernesto Estrada   JOURNAL OF THEORETICAL BIOLOGY

The BioGRID Interaction Database: 2011 update

(2010) C. Stark et al.   NUCLEIC ACIDS RESEARCH

The Genetic Landscape of a Cell

(2010) M. Costanzo et al.   SCIENCE

PhosphoGRID: a database of experimentally verified in vivo protein phosphorylation sites from the budding yeast Saccharomyces cerevisiae

(2010) C. Stark et al.   Database-The Journal of Biological Databases and Curation

High-resolution DNA-binding specificity analysis of yeast transcription factors

(2009) C. Zhu et al.   GENOME RESEARCH

Walking the Interactome for Prioritization of Candidate Disease Genes

(2008) Sebastian Köhler et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Epistasis — the essential role of gene interactions in the structure and evolution of genetic systems

(2008) Patrick C. Phillips   NATURE REVIEWS GENETICS

Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality

(2008) Elena Zotenko et al.   PLoS Computational Biology