Comparative transcriptomics across 14 Drosophila species reveals signatures of longevity

The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible

(2016) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Deficiency of circadian protein CLOCK reduces lifespan and increases age-related cataract development in mice

(2016) Yuliya V. Dubrovsky et al.   Aging-US

Dynamic regulation of genetic pathways and targets during aging in Caenorhabditis elegans

(2016) Kan He et al.   Aging-US

Organization of the Mammalian Metabolome according to Organ Function, Lineage Specialization, and Longevity

(2015) Siming Ma et al.   Cell Metabolism

Comparative Analysis of Principal Components Can be Misleading

(2015) Josef C. Uyeda et al.   SYSTEMATIC BIOLOGY

Selective anticancer agents suppress aging in Drosophila

(2015) Anton Danilov et al.   Oncotarget

Comparative validation of the D. melanogaster modENCODE transcriptome annotation

(2014) Z.-X. Chen et al.   GENOME RESEARCH

Methionine restriction extends lifespan of Drosophila melanogaster under conditions of low amino-acid status

(2014) Byung Cheon Lee et al.   Nature Communications

A Drosophila ABC Transporter Regulates Lifespan

(2014) He Huang et al.   PLoS Genetics

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

FlyBase 102—advanced approaches to interrogating FlyBase

(2013) Susan E. St. Pierre et al.   NUCLEIC ACIDS RESEARCH

Phylogenetic analysis and a time tree for a large drosophilid data set (Diptera: Drosophilidae)

(2013) Claudia A. M. Russo et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Activin Signaling Targeted by Insulin/dFOXO Regulates Aging and Muscle Proteostasis in Drosophila

(2013) Hua Bai et al.   PLoS Genetics

Impaired fatty acid oxidation in a Drosophila model of mitochondrial trifunctional protein (MTP) deficiency

(2012) Yoshihito Kishita et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

The UCSC genome browser and associated tools

(2012) R. M. Kuhn et al.   BRIEFINGS IN BIOINFORMATICS

Estimating Divergence Dates and Substitution Rates in the Drosophila Phylogeny

(2012) Darren J. Obbard et al.   MOLECULAR BIOLOGY AND EVOLUTION

A meta-analysis of caloric restriction gene expression profiles to infer common signatures and regulatory mechanisms

(2012) Michael Plank et al.   Molecular BioSystems

Overexpression of Fatty-Acid-β-Oxidation-Related Genes Extends the Lifespan ofDrosophila melanogaster

(2012) Shin-Hae Lee et al.   Oxidative Medicine and Cellular Longevity

Prediction of C. elegans Longevity Genes by Human and Worm Longevity Networks

(2012) Robi Tacutu et al.   PLoS One

The effect of resveratrol on lifespan depends on both gender and dietary nutrient composition in Drosophila melanogaster

(2011) Chunxu Wang et al.   AGE

survcomp: an R/Bioconductor package for performance assessment and comparison of survival models

(2011) Markus S. Schröder et al.   BIOINFORMATICS

Phylogenetic relationships between Sophophora and Lordiphosa, with proposition of a hypothesis on the vicariant divergences of tropical lineages between the Old and New Worlds in the family Drosophilidae

(2011) Jian-jun Gao et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

The evolution of gene expression levels in mammalian organs

(2011) David Brawand et al.   NATURE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

phytools: an R package for phylogenetic comparative biology (and other things)

(2011) Liam J. Revell   Methods in Ecology and Evolution

Mechanisms of Life Span Extension by Rapamycin in the Fruit Fly Drosophila melanogaster

(2010) Ivana Bjedov et al.   Cell Metabolism

Gene expression divergence recapitulates the developmental hourglass model

(2010) Alex T. Kalinka et al.   NATURE

Extending Healthy Life Span--From Yeast to Humans

(2010) L. Fontana et al.   SCIENCE

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Meta-analysis of age-related gene expression profiles identifies common signatures of aging

(2009) João Pedro de Magalhães et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Amino-acid imbalance explains extension of lifespan by dietary restriction in Drosophila

(2009) Richard C. Grandison et al.   NATURE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Optimization of gene expression by natural selection

(2009) T. Bedford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Database indexing for production MegaBLAST searches

(2008) Aleksandr Morgulis et al.   BIOINFORMATICS

Spatial and Temporal Control of Gene Expression in Drosophila Using the Inducible GeneSwitch GAL4 System. I. Screen for Larval Nervous System Drivers

(2008) Louise Nicholson et al.   GENETICS

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

Morphometrics of the Avian Small Intestine Compared with That of Nonflying Mammals: A Phylogenetic Approach

(2008) Shana R. Lavin et al.   PHYSIOLOGICAL AND BIOCHEMICAL ZOOLOGY