标题
The gut mycobiome of the Human Microbiome Project healthy cohort
作者
关键词
Fungi, Microbiota, Microbiome, Fungal microbiome, Fecal microbiome, HMP, ITS2, There was a high degree o Spacer, Metagenomics
出版物
Microbiome
Volume 5, Issue 1, Pages -
出版商
Springer Nature
发表日期
2017-11-25
DOI
10.1186/s40168-017-0373-4
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Fungal microbiota dysbiosis in IBD
- (2016) Harry Sokol et al. GUT
- Routine Use of Probiotics in Preterm Infants: Longitudinal Impact on the Microbiome and Metabolome
- (2016) Bashir Abdulkadir et al. Neonatology
- Population-level analysis of gut microbiome variation
- (2016) Gwen Falony et al. SCIENCE
- Fungal identification biases in microbiome projects
- (2016) Leho Tedersoo et al. Environmental Microbiology Reports
- Bacteriome and Mycobiome Interactions Underscore Microbial Dysbiosis in Familial Crohn’s Disease
- (2016) G. Hoarau et al. mBio
- Age and Gender Affect the Composition of Fungal Population of the Human Gastrointestinal Tract
- (2016) Francesco Strati et al. Frontiers in Microbiology
- Skin fungal community and its correlation with bacterial community of urban Chinese individuals
- (2016) Marcus H. Y. Leung et al. Microbiome
- Colonization with the enteric protozoa Blastocystis is associated with increased diversity of human gut bacterial microbiota
- (2016) Christophe Audebert et al. Scientific Reports
- The Prevalence of Intestinal Parasites Is Not Greater Among Individuals With Irritable Bowel Syndrome: A Population-based Case-control Study
- (2015) Laura Rindom Krogsgaard et al. Clinical Gastroenterology and Hepatology
- Fungi inhabiting the healthy human gastrointestinal tract: a diverse and dynamic community
- (2015) Heather E. Hallen-Adams et al. Fungal Ecology
- The human gut mycobiome: pitfalls and potentials--a mycologists perspective
- (2015) M. J. Suhr et al. MYCOLOGIA
- MetaPhlAn2 for enhanced metagenomic taxonomic profiling
- (2015) Duy Tin Truong et al. NATURE METHODS
- Dysbiosis of Fungal Microbiota in the Intestinal Mucosa of Patients with Colorectal Adenomas
- (2015) Chunguang Luan et al. Scientific Reports
- Characterization of Bacterial and Fungal Microbiome in Children with Hirschsprung Disease with and without a History of Enterocolitis: A Multicenter Study
- (2015) Philip K. Frykman et al. PLoS One
- Interindividual variability and intraindividual stability of oral fungal microbiota over time
- (2014) F. Monteiro-da-Silva et al. MEDICAL MYCOLOGY
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- Redefining the Human Oral Mycobiome with Improved Practices in Amplicon-based Taxonomy: Discovery of Malassezia as a Prominent Commensal
- (2014) Amanda K. Dupuy et al. PLoS One
- Characterization of the 18S rRNA Gene for Designing Universal Eukaryote Specific Primers
- (2014) Kenan Hadziavdic et al. PLoS One
- Optimal Eukaryotic 18S and Universal 16S/18S Ribosomal RNA Primers and Their Application in a Study of Symbiosis
- (2014) Yong Wang et al. PLoS One
- Eukaryote Culturomics of the Gut Reveals New Species
- (2014) Nina Gouba et al. PLoS One
- Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity
- (2014) Laura Wegener Parfrey et al. Frontiers in Microbiology
- Variable geographic distribution of Blastocystis subtypes and its potential implications
- (2013) Mohammed A. Alfellani et al. ACTA TROPICA
- Bacterial and fungal viability in the preterm gut: NEC and sepsis
- (2013) Christopher James Stewart et al. Archives of Disease in Childhood-Fetal and Neonatal Edition
- Diet rapidly and reproducibly alters the human gut microbiome
- (2013) Lawrence A. David et al. NATURE
- Topographic diversity of fungal and bacterial communities in human skin
- (2013) Keisha Findley et al. NATURE
- UPARSE: highly accurate OTU sequences from microbial amplicon reads
- (2013) Robert C Edgar NATURE METHODS
- MycoCosm portal: gearing up for 1000 fungal genomes
- (2013) Igor V. Grigoriev et al. NUCLEIC ACIDS RESEARCH
- Characterization of the Vaginal Micro- and Mycobiome in Asymptomatic Reproductive-Age Estonian Women
- (2013) Tiina Drell et al. PLoS One
- Plant and Fungal Diversity in Gut Microbiota as Revealed by Molecular and Culture Investigations
- (2013) Nina Gouba et al. PLoS One
- Archaea and Fungi of the Human Gut Microbiome: Correlations with Diet and Bacterial Residents
- (2013) Christian Hoffmann et al. PLoS One
- phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
- (2013) Paul J. McMurdie et al. PLoS One
- Fungi of the Murine Gut: Episodic Variation and Proliferation during Antibiotic Treatment
- (2013) Serena Dollive et al. PLoS One
- The emerging world of the fungal microbiome
- (2013) Gary B. Huffnagle et al. TRENDS IN MICROBIOLOGY
- Role of the Mycobiome in Human Acute Graft-versus-Host Disease
- (2012) Walter J.F.M. van der Velden et al. BIOLOGY OF BLOOD AND MARROW TRANSPLANTATION
- The Human Microbiome Project strategy for comprehensive sampling of the human microbiome and why it matters
- (2012) Kjersti Aagaard et al. FASEB JOURNAL
- Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
- (2012) J Gregory Caporaso et al. ISME Journal
- A framework for human microbiome research
- (2012) NATURE
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- A Core Human Microbiome as Viewed through 16S rRNA Sequence Clusters
- (2012) Susan M. Huse et al. PLoS One
- Interactions Between Commensal Fungi and the C-Type Lectin Receptor Dectin-1 Influence Colitis
- (2012) I. D. Iliev et al. SCIENCE
- Hidden Killers: Human Fungal Infections
- (2012) G. D. Brown et al. Science Translational Medicine
- Inferring Correlation Networks from Genomic Survey Data
- (2012) Jonathan Friedman et al. PLoS Computational Biology
- The Fungi: 1, 2, 3 … 5.1 million species?
- (2011) Meredith Blackwell AMERICAN JOURNAL OF BOTANY
- PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers
- (2011) William A. Walters et al. BIOINFORMATICS
- UCHIME improves sensitivity and speed of chimera detection
- (2011) Robert C. Edgar et al. BIOINFORMATICS
- Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes
- (2011) G. D. Wu et al. SCIENCE
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Correlation between gastrointestinal fungi and varying degrees of chronic hepatitis B virus infection
- (2010) Yu Chen et al. DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE
- Phylogenetic diversity and community structure of anaerobic gut fungi (phylum Neocallimastigomycota) in ruminant and non-ruminant herbivores
- (2010) Audra S Liggenstoffer et al. ISME Journal
- A human gut microbial gene catalogue established by metagenomic sequencing
- (2010) Junjie Qin et al. NATURE
- Characterization of the Oral Fungal Microbiome (Mycobiome) in Healthy Individuals
- (2010) Mahmoud A. Ghannoum et al. PLoS Pathogens
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culture-dependent and -independent analysis of faeces
- (2008) Pauline D Scanlan et al. ISME Journal
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