Optimal Eukaryotic 18S and Universal 16S/18S Ribosomal RNA Primers and Their Application in a Study of Symbiosis

Distinctive Microbial Community Structure in Highly Stratified Deep-Sea Brine Water Columns

(2013) S. Bougouffa et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A first exploration of genome size diversity in sponges

(2013) Nicholas W. Jeffery et al.   GENOME

Simultaneous Amplicon Sequencing to Explore Co-Occurrence Patterns of Bacterial, Archaeal and Eukaryotic Microorganisms in Rumen Microbial Communities

(2013) Sandra Kittelmann et al.   PLoS One

Effect of oxygen minimum zone formation on communities of marine protists

(2012) William Orsi et al.   ISME Journal

Utilizing pyrosequencing and quantitative PCR to characterize fungal populations among house dust samples

(2012) Matthew W. Nonnenmann et al.   JOURNAL OF ENVIRONMENTAL MONITORING

Different biogeographic patterns of prokaryotes and microbial eukaryotes in epilithic biofilms

(2012) MARIE RAGON et al.   MOLECULAR ECOLOGY

A new understanding of the decoding principle on the ribosome

(2012) Natalia Demeshkina et al.   NATURE

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Intra-Genomic Ribosomal RNA Polymorphism and Morphological Variation in Elphidium macellum Suggests Inter-Specific Hybridization in Foraminifera

(2012) Loïc Pillet et al.   PLoS One

Sequencing our way towards understanding global eukaryotic biodiversity

(2012) Holly M. Bik et al.   TRENDS IN ECOLOGY & EVOLUTION

Cellulose degradation and assimilation by the unicellular phototrophic eukaryote Chlamydomonas reinhardtii

(2012) Olga Blifernez-Klassen et al.   Nature Communications

Prevalence of partnerships between bacteria and ciliates in oxygen-depleted marine water columns

(2012) William Orsi et al.   Frontiers in Microbiology

Unveiling microbial life in the new deep-sea hypersaline Lake Thetis. Part II: a metagenomic study

(2011) Manuel Ferrer et al.   ENVIRONMENTAL MICROBIOLOGY

Comparison of microbial communities associated with three Atlantic ultramafic hydrothermal systems

(2011) Erwan G. Roussel et al.   FEMS MICROBIOLOGY ECOLOGY

Diversity and dynamics of bacterial communities in early life stages of the Caribbean coral Porites astreoides

(2011) Koty H Sharp et al.   ISME Journal

Anaerobic oxidation of methane at different temperature regimes in Guaymas Basin hydrothermal sediments

(2011) Jennifer F Biddle et al.   ISME Journal

Protistan microbial observatory in the Cariaco Basin, Caribbean. I. Pyrosequencing vs Sanger insights into species richness

(2011) Virginia Edgcomb et al.   ISME Journal

Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep-sea and shallow water sediments

(2011) HOLLY M. BIK et al.   MOLECULAR ECOLOGY

Discovery of novel intermediate forms redefines the fungal tree of life

(2011) Meredith D. M. Jones et al.   NATURE

Eukaryotic Richness in the Abyss: Insights from Pyrotag Sequencing

(2011) Jan Pawlowski et al.   PLoS One

Microbial Eukaryotes in the Human Microbiome: Ecology, Evolution, and Future Directions

(2011) Laura Wegener Parfrey et al.   Frontiers in Microbiology

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms

(2010) RALPH MEDINGER et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Crystal Structure of the Eukaryotic 40S Ribosomal Subunit in Complex with Initiation Factor 1

(2010) J. Rabl et al.   SCIENCE

Inter- and Intraspecific Variations of Bacterial Communities Associated with Marine Sponges from San Juan Island, Washington

(2009) O. O. Lee et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identification of ribosomal RNA genes in metagenomic fragments

(2009) Ying Huang et al.   BIOINFORMATICS

Metals, minerals and microbes: geomicrobiology and bioremediation

(2009) G. M. Gadd   MICROBIOLOGY-SGM

A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

(2009) Linda A. Amaral-Zettler et al.   PLoS One

Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies

(2009) Yong Wang et al.   PLoS One

Symbiotic diversity in marine animals: the art of harnessing chemosynthesis

(2008) Nicole Dubilier et al.   NATURE REVIEWS MICROBIOLOGY