scRNASeqDB: A Database for RNA-Seq Based Gene Expression Profiles in Human Single Cells

Studying hematopoiesis using single-cell technologies

(2017) Fang Ye et al.   Journal of Hematology & Oncology

TissGDB: tissue-specific gene database in cancer

(2017) Pora Kim et al.   NUCLEIC ACIDS RESEARCH

Beta-Poisson model for single-cell RNA-seq data analyses

(2016) Trung Nghia Vu et al.   BIOINFORMATICS

A single-cell resolution map of mouse hematopoietic stem and progenitor cell differentiation

(2016) S. Nestorowa et al.   BLOOD

Discrete distributional differential expression (D3E) - a tool for gene expression analysis of single-cell RNA-seq data

(2016) Mihails Delmans et al.   BMC BIOINFORMATICS

MTD: a mammalian transcriptomic database to explore gene expression and regulation

(2016) Xin Sheng et al.   BRIEFINGS IN BIOINFORMATICS

Comparison of methods to detect differentially expressed genes between single-cell populations

(2016) Maria K. Jaakkola et al.   BRIEFINGS IN BIOINFORMATICS

Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens

(2016) Atray Dixit et al.   CELL

Single-cell RNA-seq identifies a PD-1hi ILC progenitor and defines its development pathway

(2016) Yong Yu et al.   NATURE

Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma

(2016) Itay Tirosh et al.   NATURE

T cell fate and clonality inference from single-cell transcriptomes

(2016) Michael J T Stubbington et al.   NATURE METHODS

mutLBSgeneDB: mutated ligand binding site gene DataBase

(2016) Pora Kim et al.   NUCLEIC ACIDS RESEARCH

SZGR 2.0: a one-stop shop of schizophrenia candidate genes

(2016) Peilin Jia et al.   NUCLEIC ACIDS RESEARCH

Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse

(2016) Shenglin Mei et al.   NUCLEIC ACIDS RESEARCH

The Ensembl gene annotation system

(2016) Bronwen L. Aken et al.   Database-The Journal of Biological Databases and Curation

Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells

(2015) Allon M. Klein et al.   CELL

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

(2015) Evan Z. Macosko et al.   CELL

Single‐cell transcriptomes reveal characteristic features of human pancreatic islet cell types

(2015) Jin Li et al.   EMBO REPORTS

Glia Open Access Database (GOAD): A comprehensive gene expression encyclopedia of glia cells in health and disease

(2015) Inge R. Holtman et al.   GLIA

High-throughput spatial mapping of single-cell RNA-seq data to tissue of origin

(2015) Kaia Achim et al.   NATURE BIOTECHNOLOGY

sRNATarBase 3.0: an updated database for sRNA-target interactions in bacteria

(2015) Jiang Wang et al.   NUCLEIC ACIDS RESEARCH

MERAV: a tool for comparing gene expression across human tissues and cell types

(2015) Yoav D. Shaul et al.   NUCLEIC ACIDS RESEARCH

Cancer RNA-Seq Nexus: a database of phenotype-specific transcriptome profiling in cancer cells

(2015) Jian-Rong Li et al.   NUCLEIC ACIDS RESEARCH

ROTS: reproducible RNA-seq biomarker detector—prognostic markers for clear cell renal cell cancer

(2015) Fatemeh Seyednasrollah et al.   NUCLEIC ACIDS RESEARCH

‘LungGENS’: a web-based tool for mapping single-cell gene expression in the developing lung: Figure 1

(2015) Yina Du et al.   THORAX

LRG1 expression indicates unfavorable clinical outcome in hepatocellular carcinoma

(2015) Chun-Hua Wang et al.   Oncotarget

Cell fate inclination within 2-cell and 4-cell mouse embryos revealed by single-cell RNA sequencing

(2014) Fernando H. Biase et al.   GENOME RESEARCH

Bayesian approach to single-cell differential expression analysis

(2014) Peter V Kharchenko et al.   NATURE METHODS

Renal Gene Expression Database (RGED): a relational database of gene expression profiles in kidney disease

(2014) Q. Zhang et al.   Database-The Journal of Biological Databases and Curation

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

(2013) Alex K. Shalek et al.   NATURE

Human Protein Reference Database and Human Proteinpedia as resources for phosphoproteome analysis

(2011) Renu Goel et al.   Molecular BioSystems

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

McKusick's Online Mendelian Inheritance in Man (OMIM(R))

(2008) J. Amberger et al.   NUCLEIC ACIDS RESEARCH