De Novo Assembly and Analysis of Tartary Buckwheat (Fagopyrum tataricum Garetn.) Transcriptome Discloses Key Regulators Involved in Salt-Stress Response

The Tartary Buckwheat Genome Provides Insights into Rutin Biosynthesis and Abiotic Stress Tolerance

(2017) Lijun Zhang et al.   Molecular Plant

ABP9, a maize bZIP transcription factor, enhances tolerance to salt and drought in transgenic cotton

(2017) Chunling Wang et al.   PLANTA

Characterization and Ectopic Expression of CoWRI1, an AP2/EREBP Domain-Containing Transcription Factor from Coconut (Cocos nucifera L.) Endosperm, Changes the Seeds Oil Content in Transgenic Arabidopsis thaliana and Rice (Oryza sativa L.)

(2017) RuHao Sun et al.   Frontiers in Plant Science

Over-expression of a NAC 67 transcription factor from finger millet (Eleusine coracana L.) confers tolerance against salinity and drought stress in rice

(2016) Hifzur Rahman et al.   BMC BIOTECHNOLOGY

Effects of drought and salt-stresses on gene expression in Caragana korshinskii seedlings revealed by RNA-seq

(2016) Shaofeng Li et al.   BMC GENOMICS

Transcriptome analysis of smooth cordgrass (Spartina alterniflora Loisel), a monocot halophyte, reveals candidate genes involved in its adaptation to salinity

(2016) Renesh Bedre et al.   BMC GENOMICS

Abiotic Stress Signaling and Responses in Plants

(2016) Jian-Kang Zhu   CELL

Comparative transcriptomics of rice plants under cold, iron, and salt stresses

(2016) Marcelo Nogueira do Amaral et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

AsHSP17, a creeping bentgrass small heat shock protein modulates plant photosynthesis and ABA-dependent and independent signalling to attenuate plant response to abiotic stress

(2016) Xinbo Sun et al.   PLANT CELL AND ENVIRONMENT

Mutation of OsGIGANTEA Leads to Enhanced Tolerance to Polyethylene Glycol-Generated Osmotic Stress in Rice

(2016) Shuai Li et al.   Frontiers in Plant Science

Salt-Responsive Transcriptome Profiling of Suaeda glauca via RNA Sequencing

(2016) Hangxia Jin et al.   PLoS One

Transcriptome analysis in different rice cultivars provides novel insights into desiccation and salinity stress responses

(2016) Rama Shankar et al.   Scientific Reports

Transcriptome profiling of the salt-stress response in Triticum aestivum cv. Kharchia Local

(2016) Etika Goyal et al.   Scientific Reports

De novo transcriptome assembly and analysis of differentially expressed genes of two barley genotypes reveal root-zone-specific responses to salt exposure

(2016) Camilla Beate Hill et al.   Scientific Reports

Genome-wide transcriptomic and phylogenetic analyses reveal distinct aluminum-tolerance mechanisms in the aluminum-accumulating species buckwheat (Fagopyrum tataricum)

(2015) Haifeng Zhu et al.   BMC PLANT BIOLOGY

Transcriptional networks — crops, clocks, and abiotic stress

(2015) Malia A Gehan et al.   CURRENT OPINION IN PLANT BIOLOGY

A Buckwheat (Fagopyrum esculentum) DRE-Binding Transcription Factor Gene, FeDREB1, Enhances Freezing and Drought Tolerance of Transgenic Arabidopsis

(2015) Zhengwu Fang et al.   PLANT MOLECULAR BIOLOGY REPORTER

Next generation sequencing technology: Advances and applications

(2014) H.P.J. Buermans et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

Salt resistant crop plants

(2014) Stuart J Roy et al.   CURRENT OPINION IN BIOTECHNOLOGY

A Putative Lambda Class Glutathione S-Transferase Enhances Plant Survival under Salinity Stress

(2014) Ching Chan et al.   PLANT AND CELL PHYSIOLOGY

Overexpression of OsMYB48-1, a Novel MYB-Related Transcription Factor, Enhances Drought and Salinity Tolerance in Rice

(2014) Haiyan Xiong et al.   PLoS One

Plant salt-tolerance mechanisms

(2014) Ulrich Deinlein et al.   TRENDS IN PLANT SCIENCE

PlantTFcat: an online plant transcription factor and transcriptional regulator categorization and analysis tool

(2013) Xinbin Dai et al.   BMC BIOINFORMATICS

Genetic analyses of agronomic traits in Tartary buckwheat (Fagopyrum tataricum (L.) Gaertn.)

(2013) Chunhua Li et al.   BREEDING SCIENCE

Novel perspectives for the engineering of abiotic stress tolerance in plants

(2013) Julieta V Cabello et al.   CURRENT OPINION IN BIOTECHNOLOGY

Overexpression of the glutathione S-transferase gene from Pyrus pyrifolia fruit improves tolerance to abiotic stress in transgenic tobacco plants

(2013) D. Liu et al.   MOLECULAR BIOLOGY

Overexpression of L-type lectin-like protein kinase 1 confers pathogen resistance and regulates salinity response in Arabidopsis thaliana

(2013) Ping Huang et al.   PLANT SCIENCE

Release of SOS2 kinase from sequestration with GIGANTEA determines salt tolerance in Arabidopsis

(2013) Woe-Yeon Kim et al.   Nature Communications

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Wheat WRKY genes TaWRKY2 and TaWRKY19 regulate abiotic stress tolerance in transgenic Arabidopsis plants

(2012) CAN-FANG NIU et al.   PLANT CELL AND ENVIRONMENT

Genetic Evidence for an Indispensable Role of Somatic Embryogenesis Receptor Kinases in Brassinosteroid Signaling

(2012) Xiaoping Gou et al.   PLoS Genetics

Expression of OsDREB2A transcription factor confers enhanced dehydration and salt stress tolerance in rice (Oryza sativa L.)

(2011) Garladinne Mallikarjuna et al.   BIOTECHNOLOGY LETTERS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum)

(2011) Maria D Logacheva et al.   BMC GENOMICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Tobacco chloroplast transformants expressing genes encoding dehydroascorbate reductase, glutathione reductase, and glutathione-S-transferase, exhibit altered anti-oxidant metabolism and improved abiotic stress tolerance

(2011) Bénédicte Le Martret et al.   PLANT BIOTECHNOLOGY JOURNAL

Soybean NAC transcription factors promote abiotic stress tolerance and lateral root formation in transgenic plants

(2011) Yu-Jun Hao et al.   PLANT JOURNAL

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Overexpression of AtABCG36 improves drought and salt stress resistance in Arabidopsis

(2010) Do-Young Kim et al.   PHYSIOLOGIA PLANTARUM

Root-Specific Expression of OsNAC10 Improves Drought Tolerance and Grain Yield in Rice under Field Drought Conditions

(2010) J. S. Jeong et al.   PLANT PHYSIOLOGY

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

The Circadian System in Higher Plants

(2009) Stacey L. Harmer   Annual Review of Plant Biology

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

The CBL-CIPK Ca2+-decoding signaling network: function and perspectives

(2009) Stefan Weinl et al.   NEW PHYTOLOGIST

Heterologous expression ofArabidopsisH+-pyrophosphatase enhances salt tolerance in transgenic creeping bentgrass (Agrostis stoloniferaL.)

(2009) ZHIGANG LI et al.   PLANT CELL AND ENVIRONMENT

Transcriptional Regulatory Networks in Response to Abiotic Stresses in Arabidopsis and Grasses

(2009) K. Nakashima et al.   PLANT PHYSIOLOGY

Mechanisms of Salinity Tolerance

(2008) Rana Munns et al.   Annual Review of Plant Biology

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

Soybean WRKY-type transcription factor genes, GmWRKY13, GmWRKY21, and GmWRKY54, confer differential tolerance to abiotic stresses in transgenic Arabidopsis plants

(2008) Qi-Yun Zhou et al.   PLANT BIOTECHNOLOGY JOURNAL