Transcriptome analysis of smooth cordgrass (Spartina alterniflora Loisel), a monocot halophyte, reveals candidate genes involved in its adaptation to salinity

Ectopic expression of ADP ribosylation factor 1 (SaARF1) from smooth cordgrass (Spartina alterniflora Loisel) confers drought and salt tolerance in transgenic rice and Arabidopsis

(2013) Rohit Joshi et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Arabidopsis plants constitutively overexpressing a myo-inositol 1-phosphate synthase gene (SaINO1) from the halophyte smooth cordgrass exhibits enhanced level of tolerance to salt stress

(2013) Rohit Joshi et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Genome-wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis

(2012) Amit Katiyar et al.   BMC GENOMICS

De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.)

(2012) Dejun Li et al.   BMC GENOMICS

Transcriptome de novo assembly from next-generation sequencing and comparative analyses in the hexaploid salt marsh species Spartina maritima and Spartina alterniflora (Poaceae)

(2012) J Ferreira de Carvalho et al.   HEREDITY

Identifying cotton (Gossypium hirsutum L.) genes induced in response to Aspergillus flavus infection

(2012) Seokhyun Lee et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY

Enhanced salt stress tolerance of rice plants expressing a vacuolar H+-ATPase subunit c1 (SaVHAc1) gene from the halophyte grass Spartina alterniflora Löisel

(2012) Niranjan Baisakh et al.   PLANT BIOTECHNOLOGY JOURNAL

De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)

(2011) Zhangying Wang et al.   BMC GENOMICS

Gene Expression Profiling of Plants under Salt Stress

(2011) A. Jamil et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Spartina alterniflora Loisel., a halophyte grass model to dissect salt stress tolerance

(2011) Prasanta K Subudhi et al.   IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-PLANT

Analysis of Leaf and Root Transcriptomes of Soil-Grown Avena barbata Plants

(2011) Stéphanie M. Swarbreck et al.   PLANT AND CELL PHYSIOLOGY

Gene Discovery and Tissue-Specific Transcriptome Analysis in Chickpea with Massively Parallel Pyrosequencing and Web Resource Development

(2011) R. Garg et al.   PLANT PHYSIOLOGY

Over-expression of JcDREB, a putative AP2/EREBP domain-containing transcription factor gene in woody biodiesel plant Jatropha curcas, enhances salt and freezing tolerance in transgenic Arabidopsis thaliana

(2011) Mingjuan Tang et al.   PLANT SCIENCE

Comparative analyses reveal distinct sets of lineage-specific genes within Arabidopsis thaliana

(2010) Haining Lin et al.   BMC EVOLUTIONARY BIOLOGY

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

(2010) Thomas L Parchman et al.   BMC GENOMICS

Protein phosphatase complement in rice: genome-wide identification and transcriptional analysis under abiotic stress conditions and reproductive development

(2010) Amarjeet Singh et al.   BMC GENOMICS

Auxin-related gene families in abiotic stress response in Sorghum bicolor

(2010) SuiKang Wang et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Evolution of halophytes: multiple origins of salt tolerance in land plants

(2010) Timothy J. Flowers et al.   FUNCTIONAL PLANT BIOLOGY

Transcriptome divergence between the hexaploid salt-marsh sister species Spartina maritima and Spartina alterniflora (Poaceae)

(2010) H. CHELAIFA et al.   MOLECULAR ECOLOGY

Calcium-Dependent Protein Kinase CPK21 Functions in Abiotic Stress Response in Arabidopsis thaliana

(2010) Sandra Franz et al.   Molecular Plant

Investigation of the Transcriptome of Prairie Cord Grass, a New Cellulosic Biomass Crop

(2010) Kristene Gedye et al.   Plant Genome

Development and interspecific transferability of genic microsatellite markers in Spartina spp. with different genome size

(2009) Niranjan Baisakh et al.   AQUATIC BOTANY

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Identification of salt-induced genes from Salicornia brachiata, an extreme halophyte through expressed sequence tags analysis

(2009) Bhavanath Jha et al.   GENES & GENETIC SYSTEMS

PlnTFDB: updated content and new features of the plant transcription factor database

(2009) Paulino Pérez-Rodríguez et al.   NUCLEIC ACIDS RESEARCH

Salt sensitivity in chickpea

(2009) TIMOTHY J. FLOWERS et al.   PLANT CELL AND ENVIRONMENT

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Mechanisms of Salinity Tolerance

(2008) Rana Munns et al.   Annual Review of Plant Biology

Hybridization, polyploidy and invasion: lessons from Spartina (Poaceae)

(2008) M. L. Ainouche et al.   BIOLOGICAL INVASIONS

Primary responses to salt stress in a halophyte, smooth cordgrass (Spartina alterniflora Loisel.)

(2008) Niranjan Baisakh et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Salinity tolerance in halophytes*

(2008) Timothy J. Flowers et al.   NEW PHYTOLOGIST

Heat stress alters the expression of salt stress induced genes in smooth cordgrass (Spartina alterniflora L.)

(2008) Niranjan Baisakh et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

ECOLOGY: Crops for a Salinized World

(2008) J. Rozema et al.   SCIENCE