Comparative Chloroplast Genomes of Photosynthetic Orchids: Insights into Evolution of the Orchidaceae and Development of Molecular Markers for Phylogenetic Applications
出版年份 2014 全文链接
标题
Comparative Chloroplast Genomes of Photosynthetic Orchids: Insights into Evolution of the Orchidaceae and Development of Molecular Markers for Phylogenetic Applications
作者
关键词
Phylogenetic analysis, Chloroplast genome, RNA editing, Phylogenetics, Flowering plants, Comparative genomics, DNA sequence analysis, Plant genomics
出版物
PLoS One
Volume 9, Issue 6, Pages e99016
出版商
Public Library of Science (PLoS)
发表日期
2014-06-10
DOI
10.1371/journal.pone.0099016
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- RNA Editing in Plants and Its Evolution
- (2013) Mizuki Takenaka et al. Annual Review of Genetics
- Complete plastid genomes from Ophioglossum californicum, Psilotum nudum, and Equisetum hyemale reveal an ancestral land plant genome structure and resolve the position of Equisetales among monilophytes
- (2013) Felix Grewe et al. BMC EVOLUTIONARY BIOLOGY
- Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses
- (2013) Jun-Bo Yang et al. BMC EVOLUTIONARY BIOLOGY
- Complete Genome Sequence of Streptococcus dysgalactiae subsp. equisimilis 167 Carrying Lancefield Group C Antigen and Comparative Genomics of S. dysgalactiae subsp. equisimilis Strains
- (2013) Shinya Watanabe et al. Genome Biology and Evolution
- Sequencing Angiosperm Plastid Genomes Made Easy: A Complete Set of Universal Primers and a Case Study on the Phylogeny of Saxifragales
- (2013) Wenpan Dong et al. Genome Biology and Evolution
- The Complete Chloroplast Genome Sequence of the Medicinal Plant Salvia miltiorrhiza
- (2013) Jun Qian et al. PLoS One
- Complete Chloroplast Genome Sequences of Mongolia Medicine Artemisia frigida and Phylogenetic Relationships with Other Plants
- (2013) Yue Liu et al. PLoS One
- Complete Sequence and Comparative Analysis of the Chloroplast Genome of Coconut Palm (Cocos nucifera)
- (2013) Ya-Yi Huang et al. PLoS One
- The plastid genome of the mycoheterotrophic Corallorhiza striata (Orchidaceae) is in the relatively early stages of degradation
- (2012) Craig F. Barrett et al. AMERICAN JOURNAL OF BOTANY
- Systematic investigation of insertional and deletional RNA-DNA differences in the human transcriptome
- (2012) Cai Chen et al. BMC GENOMICS
- Complete cpDNA genome sequence of Smilax china and phylogenetic placement of Liliales – Influences of gene partitions and taxon sampling
- (2012) Juan Liu et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- The comparative chloroplast genomic analysis of photosynthetic orchids and developing DNA markers to distinguish Phalaenopsis orchids
- (2012) Cheng-Fong Jheng et al. PLANT SCIENCE
- Complete Chloroplast Genome Sequence of an Orchid Model Plant Candidate: Erycina pusilla Apply in Tropical Oncidium Breeding
- (2012) I-Chun Pan et al. PLoS One
- Comparative Chloroplast Genomes of Pinaceae: Insights into the Mechanism of Diversified Genomic Organizations
- (2011) Chung-Shien Wu et al. Genome Biology and Evolution
- Sequencing and Analysis of Plastid Genome in Mycoheterotrophic Orchid Neottia nidus-avis
- (2011) Maria D. Logacheva et al. Genome Biology and Evolution
- Rampant Gene Loss in the Underground Orchid Rhizanthella gardneri Highlights Evolutionary Constraints on Plastid Genomes
- (2011) E. Delannoy et al. MOLECULAR BIOLOGY AND EVOLUTION
- MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
- (2011) K. Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- The phylogeny of the BEP clade in grasses revisited: Evidence from the whole-genome sequences of chloroplasts
- (2011) Zhi-Qiang Wu et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- raxmlGUI: a graphical front-end for RAxML
- (2011) Daniele Silvestro et al. ORGANISMS DIVERSITY & EVOLUTION
- Chloroplast genomes of photosynthetic eukaryotes
- (2011) Beverley R. Green PLANT JOURNAL
- To Thy Proteins Be True: RNA Editing in Plants
- (2011) A. K. Grennan PLANT PHYSIOLOGY
- Large Scale Library Generation for High Throughput Sequencing
- (2011) Erik Borgström et al. PLoS One
- Reassessing the temporal evolution of orchids with new fossils and a Bayesian relaxed clock, with implications for the diversification of the rare South American genus Hoffmannseggella (Orchidaceae: Epidendroideae)
- (2010) A Lovisa S Gustafsson et al. BMC EVOLUTIONARY BIOLOGY
- Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae
- (2010) Fu-Hui Wu et al. BMC PLANT BIOLOGY
- When you can’t trust the DNA: RNA editing changes transcript sequences
- (2010) Volker Knoop CELLULAR AND MOLECULAR LIFE SCIENCES
- The evolution of chloroplast genome structure in ferns
- (2010) Paul G. Wolf et al. GENOME
- Implications of the Plastid Genome Sequence of Typha (Typhaceae, Poales) for Understanding Genome Evolution in Poaceae
- (2010) Mary M. Guisinger et al. JOURNAL OF MOLECULAR EVOLUTION
- Phylogenetic relationships within Orchidaceae based on a low-copy nuclear coding gene, Xdh: Congruence with organellar and nuclear ribosomal DNA results
- (2010) Marcin Górniak et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Plastid ndh genes in plant evolution
- (2010) Mercedes Martín et al. PLANT PHYSIOLOGY AND BIOCHEMISTRY
- The Complete Chloroplast Genome Sequence of Date Palm (Phoenix dactylifera L.)
- (2010) Meng Yang et al. PLoS One
- The complete chloroplast genome of tall fescue (Lolium arundinaceum ; Poaceae) and comparison of whole plastomes from the family Poaceae
- (2009) A. Bruce Cahoon et al. AMERICAN JOURNAL OF BOTANY
- PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
- (2009) Nicolas Lartillot et al. BIOINFORMATICS
- DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
- (2009) P. Librado et al. BIOINFORMATICS
- Complete chloroplast genome sequence of a tree fern Alsophila spinulosa: insights into evolutionary changes in fern chloroplast genomes
- (2009) Lei Gao et al. BMC EVOLUTIONARY BIOLOGY
- The Complete Chloroplast Genome of Coix lacryma-jobi and a Comparative Molecular Evolutionary Analysis of Plastomes in Cereals
- (2009) Charles H. Leseberg et al. JOURNAL OF MOLECULAR EVOLUTION
- Evolution of reduced and compact chloroplast genomes (cpDNAs) in gnetophytes: Selection toward a lower-cost strategy
- (2009) Chung-Shien Wu et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- The sequence and de novo assembly of the giant panda genome
- (2009) Ruiqiang Li et al. NATURE
- The PREP suite: predictive RNA editors for plant mitochondrial genes, chloroplast genes and user-defined alignments
- (2009) J. P. Mower NUCLEIC ACIDS RESEARCH
- GenomeVx: simple web-based creation of editable circular chromosome maps
- (2008) G. C. Conant et al. BIOINFORMATICS
- The complete plastid genome sequence of Welwitschia mirabilis: an unusually compact plastome with accelerated divergence rates
- (2008) Skip R McCoy et al. BMC EVOLUTIONARY BIOLOGY
- Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots
- (2008) Rui-Jiang Wang et al. BMC EVOLUTIONARY BIOLOGY
- Cucumber, melon, pumpkin, and squash: Are rules of editing in flowering plants chloroplast genes so well known indeed?
- (2008) Magdalena Guzowska-Nowowiejska et al. GENE
- Molecular evolution of rbcL in the mycoheterotrophic coralroot orchids (Corallorhiza Gagnebin, Orchidaceae)
- (2008) Craig F. Barrett et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Phylogenetic utility of ycf1 in orchids: a plastid gene more variable than matK
- (2008) Kurt M. Neubig et al. PLANT SYSTEMATICS AND EVOLUTION
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationPublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More