Stratification of Diversity and Activity of Methanogenic and Methanotrophic Microorganisms in a Nitrogen-Fertilized Italian Paddy Soil

High-resolution sequencing reveals unexplored archaeal diversity in freshwater wetland soils

(2017) Adrienne B. Narrowe et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial Community and Functional Structure Significantly Varied among Distinct Types of Paddy Soils But Responded Differently along Gradients of Soil Depth Layers

(2017) Ren Bai et al.   Frontiers in Microbiology

Effect of nitrogen fertilizer and/or rice straw amendment on methanogenic archaeal communities and methane production from a rice paddy soil

(2016) Qiongli Bao et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Archaea catalyze iron-dependent anaerobic oxidation of methane

(2016) Katharina F. Ettwig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nitrate- and nitrite-dependent anaerobic oxidation of methane

(2016) Cornelia U. Welte et al.   Environmental Microbiology Reports

Carbon isotope fractionation reveals distinct process of CH4 emission from different compartments of paddy ecosystem

(2016) Guangbin Zhang et al.   Scientific Reports

Genomic and enzymatic evidence for acetogenesis among multiple lineages of the archaeal phylum Bathyarchaeota widespread in marine sediments

(2016) Y. He et al.   Nature Microbiology

New primers for detecting and quantifying denitrifying anaerobic methane oxidation archaea in different ecological niches

(2015) Jing Ding et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Methane oxidation coupled to nitrate reduction under hypoxia by the GammaproteobacteriumMethylomonas denitrificans, sp. nov. type strain FJG1

(2015) K. Dimitri Kits et al.   ENVIRONMENTAL MICROBIOLOGY

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics

(2015) P. N. Evans et al.   SCIENCE

Microbial hotspots and hot moments in soil: Concept & review

(2015) Yakov Kuzyakov et al.   SOIL BIOLOGY & BIOCHEMISTRY

High resolution depth distribution of Bacteria, Archaea, methanotrophs, and methanogens in the bulk and rhizosphere soils of a flooded rice paddy

(2015) Hyo Jung Lee et al.   Frontiers in Microbiology

Diversity and Habitat Preferences of Cultivated and Uncultivated Aerobic Methanotrophic Bacteria Evaluated Based on pmoA as Molecular Marker

(2015) Claudia Knief   Frontiers in Microbiology

A Metagenomics-Based Metabolic Model of Nitrate-Dependent Anaerobic Oxidation of Methane by Methanoperedens-Like Archaea

(2015) Arslan Arshad et al.   Frontiers in Microbiology

Seasonal dynamics of bacterial and archaeal methanogenic communities in flooded rice fields and effect of drainage

(2015) Björn Breidenbach et al.   Frontiers in Microbiology

Oxygen availability is a major factor in determining the composition of microbial communities involved in methane oxidation

(2015) Maria E. Hernandez et al.   PeerJ

Expanding the Verrucomicrobial Methanotrophic World: Description of Three Novel Species of Methylacidimicrobium gen. nov.

(2014) Muriel C. F. van Teeseling et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metabolic versatility in methanogens

(2014) Kyle C Costa et al.   CURRENT OPINION IN BIOTECHNOLOGY

Distribution and diversity ofVerrucomicrobiamethanotrophs in geothermal and acidic environments

(2014) Christine E. Sharp et al.   ENVIRONMENTAL MICROBIOLOGY

Iron-Mediated Anaerobic Oxidation of Methane in Brackish Coastal Sediments

(2014) Matthias Egger et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Methane emission and dynamics of methanotrophic and methanogenic communities in a flooded rice field ecosystem

(2014) Hyo Jung Lee et al.   FEMS MICROBIOLOGY ECOLOGY

High abundance and diversity of nitrite-dependent anaerobic methane-oxidizing bacteria in a paddy field profile

(2014) Leiliu Zhou et al.   FEMS MICROBIOLOGY LETTERS

Evidence for nitrite-dependent anaerobic methane oxidation as a previously overlooked microbial methane sink in wetlands

(2014) B.-l. Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Classification of pmoA amplicon pyrosequences using BLAST and the lowest common ancestor method in MEGAN

(2014) Marc G. Dumont et al.   Frontiers in Microbiology

Revisiting Methanotrophic Communities in Sewage Treatment Plants

(2013) Adrian Ho et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bioenergetics and anaerobic respiratory chains of aceticlastic methanogens

(2013) Cornelia Welte et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage

(2013) Mohamed F. Haroon et al.   NATURE

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Community structure of methanogenic archaea and methane production associated with compost-treated tropical rice-field soil

(2012) Alpana Singh et al.   FEMS MICROBIOLOGY ECOLOGY

Co-occurrence and distribution of nitrite-dependent anaerobic ammonium and methane-oxidizing bacteria in a paddy soil

(2012) Yu Wang et al.   FEMS MICROBIOLOGY LETTERS

Prokaryotic Abundance and Community Composition in a Freshwater Iron-Rich Microbial Mat at Circumneutral pH

(2012) Shingo Kato et al.   GEOMICROBIOLOGY JOURNAL

Methane emissions from wetlands: biogeochemical, microbial, and modeling perspectives from local to global scales

(2012) Scott D. Bridgham et al.   GLOBAL CHANGE BIOLOGY

Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments

(2012) Kyoko Kubo et al.   ISME Journal

Characterization of the bacterial and archaeal communities in rice field soils subjected to long-term fertilization practices

(2012) Jae-Hyung Ahn et al.   JOURNAL OF MICROBIOLOGY

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Root-induced changes in radial oxygen loss, rhizosphere oxygen profile, and nitrification of two rice cultivars in Chinese red soil regions

(2012) Yilin Li et al.   PLANT AND SOIL

Microbial and Chemical Characterization of Underwater Fresh Water Springs in the Dead Sea

(2012) Danny Ionescu et al.   PLoS One

Diel cycle of methanogenmcrAtranscripts in rice rhizosphere

(2012) Yuan Xu et al.   Environmental Microbiology Reports

Methanogenic Pathway and Archaeal Communities in Three Different Anoxic Soils Amended with Rice Straw and Maize Straw

(2012) Ralf Conrad et al.   Frontiers in Microbiology

Stratified active archaeal communities in the sediments of Jiulong River estuary, China

(2012) Qianqian Li et al.   Frontiers in Microbiology

Potential ofpmoAAmplicon Pyrosequencing for Methanotroph Diversity Studies

(2011) Claudia Lüke et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Interactive metagenomic visualization in a Web browser

(2011) Brian D Ondov et al.   BMC BIOINFORMATICS

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

Activation of Methanogenesis in Arid Biological Soil Crusts Despite the Presence of Oxygen

(2011) Roey Angel et al.   PLoS One

Ageing well: methane oxidation and methane oxidizing bacteria along a chronosequence of 2000 years

(2011) Adrian Ho et al.   Environmental Microbiology Reports

Toward Understanding, Managing, and Protecting Microbial Ecosystems

(2011) Paul L. E. Bodelier   Frontiers in Microbiology

Effect of temperature change on the composition of  the bacterial and archaeal community potentially involved in the turnover of acetate and propionate in methanogenic rice field soil

(2010) Matthias Noll et al.   FEMS MICROBIOLOGY ECOLOGY

Biogeochemistry of paddy soils

(2010) Ingrid Kögel-Knabner et al.   GEODERMA

Characterization of Archaeal Community in Contaminated and Uncontaminated Surface Stream Sediments

(2010) Iris Porat et al.   MICROBIAL ECOLOGY

Nitrite-driven anaerobic methane oxidation by oxygenic bacteria

(2010) Katharina F. Ettwig et al.   NATURE

Vertical changes in bacterial and archaeal communities with soil depth in Japanese paddy fields

(2010) Takeshi WATANABE et al.   SOIL SCIENCE AND PLANT NUTRITION

Succession of Bacterial Populations during Plant Residue Decomposition in Rice Field Soil

(2009) J. Rui et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Enrichment and Molecular Detection of Denitrifying Methanotrophic Bacteria of the NC10 Phylum

(2009) K. F. Ettwig et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Functional and structural response of the methanogenic microbial community in rice field soil to temperature change

(2009) Ralf Conrad et al.   ENVIRONMENTAL MICROBIOLOGY

Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies

(2009) Yong Wang et al.   PLoS One

Environmental, genomic and taxonomic perspectives on methanotrophicVerrucomicrobia

(2009) Huub J. M. Op den Camp et al.   Environmental Microbiology Reports

The global methane cycle: recent advances in understanding the microbial processes involved

(2009) Ralf Conrad   Environmental Microbiology Reports

Denitrifying bacteria anaerobically oxidize methane in the absence ofArchaea

(2008) Katharina F. Ettwig et al.   ENVIRONMENTAL MICROBIOLOGY

Soil type links microbial colonization of rice roots to methane emission

(2008) RALF CONRAD et al.   GLOBAL CHANGE BIOLOGY

Diversity of Aerobic Methanotrophic Bacteria in a Permafrost Active Layer Soil of the Lena Delta, Siberia

(2008) Susanne Liebner et al.   MICROBIAL ECOLOGY

Significant contribution of Archaea to extant biomass in marine subsurface sediments

(2008) Julius S. Lipp et al.   NATURE