Multiple glacial refugia lead to genetic structuring and the potential for reproductive isolation in a herbaceous plant

Rethinking refugia: Tree topology, divergence dates, and demographic history trace the distribution of the endangered Plymouth gentian (Sabatia kennedyana) from the Pleistocene glaciation to present day

(2015) Adriana Suarez-Gonzalez et al.   AMERICAN JOURNAL OF BOTANY

Contrasting patterns of genetic diversity across the ranges of Pinus monticola and P. strobus : A comparison between eastern and western North American postglacial colonization histories

(2015) Simon Nadeau et al.   AMERICAN JOURNAL OF BOTANY

Spatiotemporal variation in deer browse and tolerance in a woodland herb

(2015) Holly R. Prendeville et al.   ECOLOGY

Glacial refugia and modern genetic diversity of 22 western North American tree species

(2015) D. R. Roberts et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Correlation between sequence divergence and polymorphism reveals similar evolutionary mechanisms acting across multiple timescales in a rapidly evolving plastid genome

(2014) Karen B Barnard-Kubow et al.   BMC EVOLUTIONARY BIOLOGY

Spatial filtering to reduce sampling bias can improve the performance of ecological niche models

(2014) Robert A. Boria et al.   ECOLOGICAL MODELLING

Climate refugia: joint inference from fossil records, species distribution models and phylogeography

(2014) Daniel G. Gavin et al.   NEW PHYTOLOGIST

SDMtoolbox: a python-based GIS toolkit for landscape genetic, biogeographic and species distribution model analyses

(2014) Jason L. Brown   Methods in Ecology and Evolution

Phylogeography of North American herbaceous Smilax (Smilacaceae): Combined AFLP and cpDNA data support a northern refugium in the Driftless Area

(2013) Pan Li et al.   AMERICAN JOURNAL OF BOTANY

PHYLOGEOGRAPHIC STRUCTURE AND OUTBREEDING DEPRESSION REVEAL EARLY STAGES OF REPRODUCTIVE ISOLATION IN THE NEOTROPICAL ORCHIDEPIDENDRUM DENTICULATUM

(2013) Fábio Pinheiro et al.   EVOLUTION

Making better Maxentmodels of species distributions: complexity, overfitting and evaluation

(2013) Aleksandar Radosavljevic et al.   JOURNAL OF BIOGEOGRAPHY

Influence of late Quaternary climate change on present patterns of genetic variation in valley oak,Quercus lobataNée

(2013) Paul F. Gugger et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Clinal variation for only some phenological traits across a species range

(2013) Holly R. Prendeville et al.   OECOLOGIA

Reproductive isolation between phylogeographic lineages scales with divergence

(2013) S. Singhal et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

How does selection of climate variables affect predictions of species distributions? A case study of three new weeds in New Zealand

(2013) C S Sheppard   WEED RESEARCH

Glacial cycles as an allopatric speciation pump in north-eastern American freshwater fishes

(2012) Julien April et al.   MOLECULAR ECOLOGY

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Glacial Survival of Boreal Trees in Northern Scandinavia

(2012) L. Parducci et al.   SCIENCE

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Resolving the Evolutionary History of Campanula (Campanulaceae) in Western North America

(2011) Barry M. Wendling et al.   PLoS One

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Genome-wide investigation reveals high evolutionary rates in annual model plants

(2010) Jia-Xing Yue et al.   BMC PLANT BIOLOGY

Ecological niche modeling in Maxent: the importance of model complexity and the performance of model selection criteria

(2010) Dan L. Warren et al.   ECOLOGICAL APPLICATIONS

The effect of the extent of the study region on GIS models of species geographic distributions and estimates of niche evolution: preliminary tests with montane rodents (genus Nephelomys) in Venezuela

(2010) Robert P. Anderson et al.   JOURNAL OF BIOGEOGRAPHY

Genetic Consequences of Range Expansions

(2009) Laurent Excoffier et al.   Annual Review of Ecology Evolution and Systematics

Reconsidering the generation time hypothesis based on nuclear ribosomal ITS sequence comparisons in annual and perennial angiosperms

(2009) David F Soria-Hernanz et al.   BMC EVOLUTIONARY BIOLOGY

Inferring the past from the present phylogeographic structure of North American forest trees: seeing the forest for the genes

(2009) Juan P. Jaramillo-Correa et al.   CANADIAN JOURNAL OF FOREST RESEARCH

Identification of glacial refugia in south-eastern North America by phylogeographical analyses of a forest understorey plant, Trillium cuneatum

(2008) Eva Gonzales et al.   JOURNAL OF BIOGEOGRAPHY

Phylogeographical structure and temporal complexity in American sweetgum (Liquidambar styraciflua; Altingiaceae)

(2008) ASHLEY B. MORRIS et al.   MOLECULAR ECOLOGY

Genetic consequences of glacial survival and postglacial colonization in Norway spruce: combined analysis of mitochondrial DNA and fossil pollen

(2008) MARI METTE TOLLEFSRUD et al.   MOLECULAR ECOLOGY

Rates of Molecular Evolution Are Linked to Life History in Flowering Plants

(2008) S. A. Smith et al.   SCIENCE

Phylogeographic insights into cryptic glacial refugia

(2008) J PROVAN et al.   TRENDS IN ECOLOGY & EVOLUTION

AUC: a misleading measure of the performance of predictive distribution models

(2007) Jorge M. Lobo et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY