The intestinal microbiota: its role in health and disease

Gastrointestinal microbiota and metabolite biomarkers in children with autism spectrum disorders

(2014) Lv Wang et al.   Biomarkers in Medicine

The Microbiome and Obesity—An Established Risk for Certain Types of Cancer

(2014) Connie J. Rogers et al.   CANCER JOURNAL

The intestinal microbiome in type 1 diabetes

(2014) J. L. Dunne et al.   CLINICAL AND EXPERIMENTAL IMMUNOLOGY

Effect of diet on the intestinal microbiota and its activity

(2014) Erwin G. Zoetendal et al.   CURRENT OPINION IN GASTROENTEROLOGY

The Intestinal Metabolome: An Intersection Between Microbiota and Host

(2014) Luke K. Ursell et al.   GASTROENTEROLOGY

Diet and the Intestinal Microbiome: Associations, Functions, and Implications for Health and Disease

(2014) Lindsey G. Albenberg et al.   GASTROENTEROLOGY

Compositional and Functional Features of the Gastrointestinal Microbiome and Their Effects on Human Health

(2014) Emily B. Hollister et al.   GASTROENTEROLOGY

The Multifaceted Role of the Intestinal Microbiota in Colon Cancer

(2014) Thergiory Irrazábal et al.   MOLECULAR CELL

NOD2 Polymorphisms Associated with Cancer Risk: A Meta-Analysis

(2014) Jingwei Liu et al.   PLoS One

Intestinal barrier in inflammatory bowel disease

(2014) Lena Antoni   WORLD JOURNAL OF GASTROENTEROLOGY

Impact of Diet on Human Intestinal Microbiota and Health

(2014) Anne Salonen et al.   Annual Review of Food Science and Technology

Temporal Bacterial Community Dynamics Vary Among Ulcerative Colitis Patients After Fecal Microbiota Transplantation

(2013) Sieglinde Angelberger et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

HPC-CLUST: distributed hierarchical clustering for large sets of nucleotide sequences

(2013) João F. Matias Rodrigues et al.   BIOINFORMATICS

Microarray analysis reveals marked intestinal microbiota aberrancy in infants having eczema compared to healthy children in at-risk for atopic disease

(2013) Lotta Nylund et al.   BMC MICROBIOLOGY

Altered gut microbiota and activity in a murine model of autism spectrum disorders

(2013) Caroline G.M. de Theije et al.   BRAIN BEHAVIOR AND IMMUNITY

Host genotype, intestinal microbiota and inflammatory disorders

(2013) Marta Olivares et al.   BRITISH JOURNAL OF NUTRITION

Intestinal microbiota, diet and health

(2013) Susan E. Power et al.   BRITISH JOURNAL OF NUTRITION

Emerging roles of the microbiome in cancer

(2013) S. J. Bultman   CARCINOGENESIS

The Human Gut Microbiome and Body Metabolism: Implications for Obesity and Diabetes

(2013) S. Devaraj et al.   CLINICAL CHEMISTRY

Inflammatory Bowel Disease Is Associated With an Increased Risk of Melanoma: A Systematic Review and Meta-analysis

(2013) Siddharth Singh et al.   Clinical Gastroenterology and Hepatology

Microbiome and mucosal inflammation as extra-articular triggers for rheumatoid arthritis and autoimmunity

(2013) Samuel B. Brusca et al.   CURRENT OPINION IN RHEUMATOLOGY

Induction of Diabetes in the RIP-B7.1 Mouse Model Is Critically Dependent on TLR3 and MyD88 Pathways and Is Associated With Alterations in the Intestinal Microbiome

(2013) A. K. Alkanani et al.   DIABETES

The Human Gut Microbiome and Its Dysfunctions

(2013) Stanislas Mondot et al.   DIGESTIVE DISEASES

Defective Antibacterial Barrier in Inflammatory Bowel Disease

(2013) Thomas Klag et al.   DIGESTIVE DISEASES

Antimicrobial peptides and gut microbiota in homeostasis and pathology

(2013) Maureen J. Ostaff et al.   EMBO Molecular Medicine

The heart and the gut

(2013) Gerhard Rogler et al.   EUROPEAN HEART JOURNAL

Consumption of Fermented Milk Product With Probiotic Modulates Brain Activity

(2013) Kirsten Tillisch et al.   GASTROENTEROLOGY

Genetic susceptibility to increased bacterial translocation influences the response to biological therapy in patients with Crohn's disease

(2013) Ana Gutiérrez et al.   GUT

Western diet induces dysbiosis with increasedE coliin CEABAC10 mice,alters host barrier function favouring AIEC colonisation

(2013) Margarita Martinez-Medina et al.   GUT

Beyond liver fibrosis: Hepatic stellate cell senescence links obesity to liver cancer by way of the microbiome

(2013) Nicholas A. Shackel et al.   HEPATOLOGY

Phylogenetic Analysis of Dysbiosis in Ulcerative Colitis During Remission

(2013) Mirjana Rajilić-Stojanović et al.   INFLAMMATORY BOWEL DISEASES

Alteration of Intestinal Dysbiosis by Fecal Microbiota Transplantation Does not Induce Remission in Patients with Chronic Active Ulcerative Colitis

(2013) Patrizia K. Kump et al.   INFLAMMATORY BOWEL DISEASES

Establishment of the intestinal microbiota and its role for atopic dermatitis in early childhood

(2013) John Penders et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Human colonic mucus is a reservoir for antimicrobial peptides

(2013) Lena Antoni et al.   Journal of Crohns & Colitis

Influence of dietary fat on intestinal microbes, inflammation, barrier function and metabolic outcomes

(2013) Wan Shen et al.   JOURNAL OF NUTRITIONAL BIOCHEMISTRY

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

High-density genotyping study identifies four new susceptibility loci for atopic dermatitis

(2013) David Ellinghaus et al.   NATURE GENETICS

Altered colonic function and microbiota profile in a mouse model of chronic depression

(2013) A. J. Park et al.   NEUROGASTROENTEROLOGY AND MOTILITY

Melancholic microbes: a link between gut microbiota and depression?

(2013) T. G. Dinan et al.   NEUROGASTROENTEROLOGY AND MOTILITY

Smoking Cessation Induces Profound Changes in the Composition of the Intestinal Microbiota in Humans

(2013) Luc Biedermann et al.   PLoS One

Fecal Microbiota and Metabolome of Children with Autism and Pervasive Developmental Disorder Not Otherwise Specified

(2013) Maria De Angelis et al.   PLoS One

Gut Microbiomes of Malawian Twin Pairs Discordant for Kwashiorkor

(2013) M. I. Smith et al.   SCIENCE

The Intestinal Microbiota Modulates the Anticancer Immune Effects of Cyclophosphamide

(2013) S. Viaud et al.   SCIENCE

Gut Microbiota from Twins Discordant for Obesity Modulate Metabolism in Mice

(2013) V. K. Ridaura et al.   SCIENCE

Gut Microbiota, Low-grade Inflammation, and Metabolic Syndrome

(2013) Benoit Chassaing et al.   TOXICOLOGIC PATHOLOGY

The Microbiome and Inflammatory Bowel Disease: Is There a Therapeutic Role for Fecal Microbiota Transplantation?

(2012) Christopher J Damman et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

TNF-α-induced intestinal epithelial cell shedding: implications for intestinal barrier function

(2012) Alastair J.M. Watson et al.   Annals of the New York Academy of Sciences

Unbalance of intestinal microbiota in atopic children

(2012) Marco Candela et al.   BMC MICROBIOLOGY

The role of the intestinal microbiota in type 1 diabetes

(2012) Naoko Hara et al.   CLINICAL IMMUNOLOGY

Inflammatory bowel disease pathogenesis

(2012) Michael Scharl et al.   CURRENT OPINION IN GASTROENTEROLOGY

Does the Human Gut Microbiota Contribute to the Etiology of Autism Spectrum Disorders?

(2012) Petra Louis   DIGESTIVE DISEASES AND SCIENCES

Transfer of Intestinal Microbiota From Lean Donors Increases Insulin Sensitivity in Individuals With Metabolic Syndrome

(2012) Anne Vrieze et al.   GASTROENTEROLOGY

Temporal shifts in the skin microbiome associated with disease flares and treatment in children with atopic dermatitis

(2012) H. H. Kong et al.   GENOME RESEARCH

Connecting dysbiosis, bile-acid dysmetabolism and gut inflammation in inflammatory bowel diseases

(2012) Henri Duboc et al.   GUT

Association between C13ORF31, NOD2, RIPK2 and TLR10 polymorphisms and urothelial bladder cancer

(2012) Macarena Guirado et al.   HUMAN IMMUNOLOGY

Retraction: Composition and roles of intestinal microbiota in children

(2012) Alfredo Guarino et al.   Journal of Maternal-Fetal & Neonatal Medicine

Inflammatory bowel disease: an impaired barrier disease

(2012) Simon Jäger et al.   LANGENBECKS ARCHIVES OF SURGERY

Host–microbe interactions have shaped the genetic architecture of inflammatory bowel disease

(2012) Luke Jostins et al.   NATURE

Dysbiosis driven by inflammasome deficiency exacerbates hepatic steatosis and governs rate of NAFLD progression

(2012) Natalie J. Wood   Nature Reviews Gastroenterology & Hepatology

Human  -Defensin 6 Promotes Mucosal Innate Immunity Through Self-Assembled Peptide Nanonets

(2012) H. Chu et al.   SCIENCE

The Application of Ecological Theory Toward an Understanding of the Human Microbiome

(2012) E. K. Costello et al.   SCIENCE

Intestinal Inflammation Targets Cancer-Inducing Activity of the Microbiota

(2012) J. C. Arthur et al.   SCIENCE

Intestinal microbiota is a plastic factor responding to environmental changes

(2012) Marco Candela et al.   TRENDS IN MICROBIOLOGY

Host–microbe interactions that facilitate gut colonization by commensal bifidobacteria

(2012) Marco Ventura et al.   TRENDS IN MICROBIOLOGY

Association of NOD1 and NOD2 genes polymorphisms withHelicobacter pylorirelated gastric cancer in a Chinese population

(2012) Peng Wang   WORLD JOURNAL OF GASTROENTEROLOGY

Association Between the Use of Antibiotics and New Diagnoses of Crohn's Disease and Ulcerative Colitis

(2011) Souradet Y Shaw et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Antibiotic Therapy in Inflammatory Bowel Disease: A Systematic Review and Meta-Analysis

(2011) Khurram J Khan et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Type 1 diabetes: role of intestinal microbiome in humans and mice

(2011) Brian P. Boerner et al.   Annals of the New York Academy of Sciences

NOD2/CARD15 gene polymorphisms affect outcome in pediatric allogeneic stem cell transplantation

(2011) H. Kreyenberg et al.   BLOOD

Role of microbiota in postnatal maturation of intestinal T-cell responses

(2011) Valérie Gaboriau-Routhiau et al.   CURRENT OPINION IN GASTROENTEROLOGY

Host genetic susceptibility, dysbiosis, and viral triggers in inflammatory bowel disease

(2011) Lulu Sun et al.   CURRENT OPINION IN GASTROENTEROLOGY

Effects of a germ-free environment on gut immune regulation and diabetes progression in non-obese diabetic (NOD) mice

(2011) C. Alam et al.   DIABETOLOGIA

Interaction between Susceptibility and Environment: Examples from the Digestive Tract

(2011) Gerhard Rogler   DIGESTIVE DISEASES

Development of the Human Gastrointestinal Microbiota and Insights From High-Throughput Sequencing

(2011) Maria Gloria Dominguez-Bello et al.   GASTROENTEROLOGY

The Epithelial Barrier Is Maintained by In Vivo Tight Junction Expansion During Pathologic Intestinal Epithelial Shedding

(2011) Amanda M. Marchiando et al.   GASTROENTEROLOGY

Global and Deep Molecular Analysis of Microbiota Signatures in Fecal Samples From Patients With Irritable Bowel Syndrome

(2011) Mirjana Rajilić–Stojanović et al.   GASTROENTEROLOGY

Gastrointestinal Microbiome Signatures of Pediatric Patients With Irritable Bowel Syndrome

(2011) Delphine M. Saulnier et al.   GASTROENTEROLOGY

Increasing Incidence and Prevalence of the Inflammatory Bowel Diseases With Time, Based on Systematic Review

(2011) Natalie A. Molodecky et al.   GASTROENTEROLOGY

Nod2 is essential for temporal development of intestinal microbial communities

(2011) A. Rehman et al.   GUT

Dysbiosis of the faecal microbiota in patients with Crohn's disease and their unaffected relatives

(2011) M. Joossens et al.   GUT

New IBD genetics: common pathways with other diseases

(2011) C. W. Lees et al.   GUT

Smokers with active Crohnʼs disease have a clinically relevant dysbiosis of the gastrointestinal microbiota*

(2011) Jane L. Benjamin et al.   INFLAMMATORY BOWEL DISEASES

Alterations in diversity of the oral microbiome in pediatric inflammatory bowel disease

(2011) Michael J. Docktor et al.   INFLAMMATORY BOWEL DISEASES

The Intestinal Microbiota and Obesity

(2011) Samuel J. Kallus et al.   JOURNAL OF CLINICAL GASTROENTEROLOGY

A Structural Basis for Sustained Bacterial Adhesion: Biomechanical Properties of CFA/I Pili

(2011) Magnus Andersson et al.   JOURNAL OF MOLECULAR BIOLOGY

The association between the PTPN22 C1858T polymorphism and rheumatoid arthritis: a meta-analysis update

(2011) Young Ho Lee et al.   MOLECULAR BIOLOGY REPORTS

Reduction of disulphide bonds unmasks potent antimicrobial activity of human β-defensin 1

(2011) Bjoern O. Schroeder et al.   NATURE

Rifaximin Therapy for Patients with Irritable Bowel Syndrome without Constipation

(2011) Mark Pimentel et al.   NEW ENGLAND JOURNAL OF MEDICINE

Gut Microbiome Metagenomics Analysis Suggests a Functional Model for the Development of Autoimmunity for Type 1 Diabetes

(2011) Christopher T. Brown et al.   PLoS One

Predicting a Human Gut Microbiota's Response to Diet in Gnotobiotic Mice

(2011) J. J. Faith et al.   SCIENCE

Real-time PCR analysis of enteric pathogens from fecal samples of irritable bowel syndrome subjects

(2011) Teemu Rinttilä et al.   Gut Pathogens

Probiotic bacteria and intestinal epithelial barrier function

(2010) Christina L. Ohland et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

The Human Gut Microbiome: Ecology and Recent Evolutionary Changes

(2010) Jens Walter et al.   Annual Review of Microbiology

Smoking, Physical Activity, Nutrition and Lifestyle: Environmental Factors and Their Impact on IBD

(2010) Jacques Cosnes   DIGESTIVE DISEASES

Proteoglycans in host–pathogen interactions: molecular mechanisms and therapeutic implications

(2010) Allison H. Bartlett et al.   EXPERT REVIEWS IN MOLECULAR MEDICINE

Association of the NOD2 genotype with bacterial translocation via altered cell–cell contacts in Crohnʼs disease patients

(2010) Katrin Kosovac et al.   INFLAMMATORY BOWEL DISEASES

Dysbiosis of fecal microbiota in Crohnʼs disease patients as revealed by a custom phylogenetic microarray

(2010) Seungha Kang et al.   INFLAMMATORY BOWEL DISEASES

Obesity, Metabolic Syndrome, and Microbiota

(2010) Herbert Tilg   JOURNAL OF CLINICAL GASTROENTEROLOGY

Long-term impacts of antibiotic exposure on the human intestinal microbiota

(2010) C. Jernberg et al.   MICROBIOLOGY-SGM

Composition, variability, and temporal stability of the intestinal microbiota of the elderly

(2010) M. J. Claesson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Human oral, gut, and plaque microbiota in patients with atherosclerosis

(2010) O. Koren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Vaginal microbiome of reproductive-age women

(2010) J. Ravel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation

(2010) L. Dethlefsen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

(2010) M. G. Dominguez-Bello et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolic Syndrome and Altered Gut Microbiota in Mice Lacking Toll-Like Receptor 5

(2010) M. Vijay-Kumar et al.   SCIENCE

Has the Microbiota Played a Critical Role in the Evolution of the Adaptive Immune System?

(2010) Y. K. Lee et al.   SCIENCE

Luminal and mucosal-associated intestinal microbiota in patients with diarrhea-predominant irritable bowel syndrome

(2010) Ian M Carroll et al.   Gut Pathogens

Abnormal CEACAM6 expression in Crohn disease patients favors gut colonization and inflammation by Adherent-InvasiveE. coli

(2010) Nicolas Barnich et al.   Virulence

Intestinal Dysbiosis: A Possible Mechanism of Alcohol-Induced Endotoxemia and Alcoholic Steatohepatitis in Rats

(2009) Ece Mutlu et al.   ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH

The Firmicutes/Bacteroidetes ratio of the human microbiota changes with age

(2009) D Mariat et al.   BMC MICROBIOLOGY

The effect of age and non-steroidal anti-inflammatory drugs on human intestinal microbiota composition

(2009) Harri Mäkivuokko et al.   BRITISH JOURNAL OF NUTRITION

Recipient NOD2/CARD15 status affects cellular infiltrates in human intestinal graft-versus-host disease

(2009) K. Landfried et al.   CLINICAL AND EXPERIMENTAL IMMUNOLOGY

Commensal bacteria, traditional and opportunistic pathogens, dysbiosis and bacterial killing in inflammatory bowel diseases

(2009) Christopher D Packey et al.   CURRENT OPINION IN INFECTIOUS DISEASES

A Molecular Analysis of Fecal and Mucosal Bacterial Communities in Irritable Bowel Syndrome

(2009) Caroline Codling et al.   DIGESTIVE DISEASES AND SCIENCES

Influence of antibiotic exposure in the early postnatal period on the development of intestinal microbiota

(2009) Shigemitsu Tanaka et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

Intestinal Microbiota Gives a Nod to the Hygiene Hypothesis in Type 1 Diabetes

(2009) Rodrigue Dessein et al.   GASTROENTEROLOGY

Nod2 regulates the host response towards microflora by modulating T cell function and epithelial permeability in mouse Peyer's patches

(2009) F. Barreau et al.   GUT

Changes in gut microbiota control inflammation in obese mice through a mechanism involving GLP-2-driven improvement of gut permeability

(2009) P. D. Cani et al.   GUT

Crohn's disease adherent-invasiveEscherichia colicolonize and induce strong gut inflammation in transgenic mice expressing human CEACAM

(2009) Frédéric A. Carvalho et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Interplay Between Weight Loss and Gut Microbiota Composition in Overweight Adolescents

(2009) Arlette Santacruz et al.   Obesity

Innate and Adaptive Immunity Cooperate Flexibly to Maintain Host-Microbiota Mutualism

(2009) E. Slack et al.   SCIENCE

Genetics of inflammatory bowel disease: implications for disease pathogenesis and natural history

(2009) Charlie W Lees et al.   Expert Review of Gastroenterology & Hepatology

Early Life Stress Alters Behavior, Immunity, and Microbiota in Rats: Implications for Irritable Bowel Syndrome and Psychiatric Illnesses

(2008) Siobhain M. O'Mahony et al.   BIOLOGICAL PSYCHIATRY

Culture-independent analysis of the gut microbiota in colorectal cancer and polyposis

(2008) Pauline D. Scanlan et al.   ENVIRONMENTAL MICROBIOLOGY

Chylomicrons promote intestinal absorption of lipopolysaccharides

(2008) Sarbani Ghoshal et al.   JOURNAL OF LIPID RESEARCH

Barrier dysfunction due to distinct defensin deficiencies in small intestinal and colonic Crohn's disease

(2008) J Wehkamp et al.   Mucosal Immunology

Innate immunity and intestinal microbiota in the development of Type 1 diabetes

(2008) Li Wen et al.   NATURE

The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing

(2008) Les Dethlefsen et al.   PLOS BIOLOGY