Genetic hurdles limit the arms race between Prochlorococcus and the T7-like podoviruses infecting them

Coevolution with Bacteriophages Drives Genome-Wide Host Evolution and Constrains the Acquisition of Abiotic-Beneficial Mutations

(2015) Pauline D. Scanlan et al.   MOLECULAR BIOLOGY AND EVOLUTION

The evolution of bacterial resistance against bacteriophages in the horse chestnut phyllosphere is general across both space and time

(2015) Britt Koskella et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Convergent evolution toward an improved growth rate and a reduced resistance range inProchlorococcusstrains resistant to phage

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The Molecular and Genetic Basis of Repeatable Coevolution between Escherichia coli and Bacteriophage T3 in a Laboratory Microcosm

(2015) Elizabeth B. Perry et al.   PLoS One

Host-dependent differences in abundance, composition and host range of cyanophages from the Red Sea

(2014) Naama P. Dekel-Bird et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity and Geographical Distribution of Flavobacterium psychrophilum Isolates and Their Phages: Patterns of Susceptibility to Phage Infection and Phage Host Range

(2014) Daniel Castillo et al.   MICROBIAL ECOLOGY

Explaining microbial genomic diversity in light of evolutionary ecology

(2014) Otto X. Cordero et al.   NATURE REVIEWS MICROBIOLOGY

Frequency and Fitness Consequences of Bacteriophage Φ6 Host Range Mutations

(2014) Brian E. Ford et al.   PLoS One

Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus

(2014) N. Kashtan et al.   SCIENCE

Evidence for metaviromic islands in marine phages

(2014) Carolina Megumi Mizuno et al.   Frontiers in Microbiology

Antagonistic Coevolution of Marine Planktonic Viruses and Their Hosts

(2013) Jennifer B.H. Martiny et al.   Annual Review of Marine Science

Diversity and evolutionary relationships of T7-like podoviruses infecting marine cyanobacteria

(2013) Naama P. Dekel-Bird et al.   ENVIRONMENTAL MICROBIOLOGY

Structural Characterization of the Bacteriophage T7 Tail Machinery

(2013) Ana Cuervo et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Revenge of the phages: defeating bacterial defences

(2013) Julie E. Samson et al.   NATURE REVIEWS MICROBIOLOGY

Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus

(2013) P. Flombaum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Bacteriophage T7 Virion Undergoes Extensive Structural Remodeling During Infection

(2013) B. Hu et al.   SCIENCE

Genomes of marine cyanopodoviruses reveal multiple origins of diversity

(2012) S. J. Labrie et al.   ENVIRONMENTAL MICROBIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

A novel lineage of myoviruses infecting cyanobacteria is widespread in the oceans

(2012) G. Sabehi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid diversification of coevolving marine Synechococcus and a virus

(2012) M. F. Marston et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Repeatability and Contingency in the Evolution of a Key Innovation in Phage Lambda

(2012) J. R. Meyer et al.   SCIENCE

Host-parasite coevolutionary arms races give way to fluctuating selection

(2011) Alex R. Hall et al.   ECOLOGY LETTERS

Ocean time-series reveals recurring seasonal patterns of virioplankton dynamics in the northwestern Sargasso Sea

(2011) Rachel J Parsons et al.   ISME Journal

Genomic island variability facilitates Prochlorococcus–virus coexistence

(2011) Sarit Avrani et al.   NATURE

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(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Statistical structure of host-phage interactions

(2011) C. O. Flores et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism

(2011) L. R. Thompson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacteria-Phage Antagonistic Coevolution in Soil

(2011) P. Gomez et al.   SCIENCE

Ongoing Phenotypic and Genomic Changes in Experimental Coevolution of RNA Bacteriophage Qβ and Escherichia coli

(2011) Akiko Kashiwagi et al.   PLoS Genetics

Trade-Offs between Competition and Defense Specialists among Unicellular Planktonic Organisms: the "Killing the Winner" Hypothesis Revisited

(2010) C. Winter et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Genetic basis of infectivity evolution in a bacteriophage

(2010) PAULINE D. SCANLAN et al.   MOLECULAR ECOLOGY

Antagonistic coevolution accelerates molecular evolution

(2010) Steve Paterson et al.   NATURE

Bacteriophage resistance mechanisms

(2010) Simon J. Labrie et al.   NATURE REVIEWS MICROBIOLOGY

Structural changes in a marine podovirus associated with release of its genome into Prochlorococcus

(2010) Xiangan Liu et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Host Mixing and Disease Emergence

(2009) Rebecca Benmayor et al.   CURRENT BIOLOGY

Explaining microbial population genomics through phage predation

(2009) Francisco Rodriguez-Valera et al.   NATURE REVIEWS MICROBIOLOGY

Durability of plant major resistance genes to pathogens depends on the genetic background, experimental evidence and consequences for breeding strategies

(2009) A. Palloix et al.   NEW PHYTOLOGIST

Facilitation of Robust Growth of Prochlorococcus Colonies and Dilute Liquid Cultures by "Helper" Heterotrophic Bacteria

(2008) J. J. Morris et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Prevalence of highly host-specific cyanophages in the estuarine environment

(2007) Kui Wang et al.   ENVIRONMENTAL MICROBIOLOGY