Deep sequencing of the viralphoHgene reveals temporal variation, depth-specific composition, and persistent dominance of the same viralphoHgenes in the Sargasso Sea

Using Signature Genes as Tools To Assess Environmental Viral Ecology and Diversity

(2014) Evelien M. Adriaenssens et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SDT: A Virus Classification Tool Based on Pairwise Sequence Alignment and Identity Calculation

(2014) Brejnev Muhizi Muhire et al.   PLoS One

A theoretical analysis of how strain-specific viruses can control microbial species diversity

(2014) T. F. Thingstad et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Strong Seasonality and Interannual Recurrence in Marine Myovirus Communities

(2013) A. Pagarete et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity and temporal dynamics of Southern California coastal marine cyanophage isolates

(2013) JL Clasen et al.   AQUATIC MICROBIAL ECOLOGY

Complex seasonality observed amongst diverse phytoplankton viruses in the Bay of Quinte, an embayment of Lake Ontario

(2013) R. M. Rozon et al.   FRESHWATER BIOLOGY

Short-term observations of marine bacterial and viral communities: patterns, connections and resilience

(2013) David M Needham et al.   ISME Journal

Abundant SAR11 viruses in the ocean

(2013) Yanlin Zhao et al.   NATURE

The Pacific Ocean Virome (POV): A Marine Viral Metagenomic Dataset and Associated Protein Clusters for Quantitative Viral Ecology

(2013) Bonnie L. Hurwitz et al.   PLoS One

The global virome: not as big as we thought?

(2013) J Cesar Ignacio-Espinoza et al.   Current Opinion in Virology

Evaluation of Two Approaches for Assessing the Genetic Similarity of Virioplankton Populations as Defined by Genome Size

(2012) Sanchita Jamindar et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dynamic Viral Populations in Hypersaline Systems as Revealed by Metagenomic Assembly

(2012) Joanne B. Emerson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Highly improved homopolymer aware nucleotide-protein alignments with 454 data

(2012) Fredrik Lysholm   BMC BIOINFORMATICS

PhiSiGns: an online tool to identify signature genes in phages and design PCR primers for examining phage diversity

(2012) Bhakti Dwivedi et al.   BMC BIOINFORMATICS

Viruses in a deep oligotrophic sea: Seasonal distribution of marine viruses in the epi-, meso- and bathypelagic waters of the Eastern Mediterranean Sea

(2012) Iordanis Magiopoulos et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Seasonality and monthly dynamics of marine myovirus communities

(2012) Cheryl-Emiliane T. Chow et al.   ENVIRONMENTAL MICROBIOLOGY

Marine cyanophages exhibit local and regional biogeography

(2012) Marcia F. Marston et al.   ENVIRONMENTAL MICROBIOLOGY

Groundtruthing Next-Gen Sequencing for Microbial Ecology–Biases and Errors in Community Structure Estimates from PCR Amplicon Pyrosequencing

(2012) Charles K. Lee et al.   PLoS One

Marine Viruses: Truth or Dare

(2011) Mya Breitbart   Annual Review of Marine Science

Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification

(2011) David Berry et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Development ofphoHas a Novel Signature Gene for Assessing Marine Phage Diversity

(2011) Dawn B. Goldsmith et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Amplification Methods Bias Metagenomic Libraries of Uncultured Single-Stranded and Double-Stranded DNA Viruses

(2011) Kyoung-Ho Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The diversity of cyanomyovirus populations along a North–South Atlantic Ocean transect

(2011) Eleanor Jameson et al.   ISME Journal

Ocean time-series reveals recurring seasonal patterns of virioplankton dynamics in the northwestern Sargasso Sea

(2011) Rachel J Parsons et al.   ISME Journal

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Ubiquitous cyanobacterial podoviruses in the global oceans unveiled through viral DNA polymerase gene sequences

(2010) Sijun Huang et al.   ISME Journal

Viral and microbial community dynamics in four aquatic environments

(2010) Beltran Rodriguez-Brito et al.   ISME Journal

Marine Prasinovirus Genomes Show Low Evolutionary Divergence and Acquisition of Protein Metabolism Genes by Horizontal Gene Transfer

(2010) H. Moreau et al.   JOURNAL OF VIROLOGY

Multiple displacement amplification compromises quantitative analysis of metagenomes

(2010) Suzan Yilmaz et al.   NATURE METHODS

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

(2010) Federico Abascal et al.   NUCLEIC ACIDS RESEARCH

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Seasonal and depth-related dynamics of prokaryotes and viruses in surface and deep waters of the northwestern Mediterranean Sea

(2009) Christian Winter et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

From small hosts come big viruses: the complete genome of a secondOstreococcus taurivirus, OtV-1

(2009) Karen D. Weynberg et al.   ENVIRONMENTAL MICROBIOLOGY

Quantitative PCR reveals transient and persistent algal viruses in Lake Ontario, Canada

(2009) Steven M. Short et al.   ENVIRONMENTAL MICROBIOLOGY

Diverse and dynamic populations of cyanobacterial podoviruses in the Chesapeake Bay unveiled through DNA polymerase gene sequences

(2009) Feng Chen et al.   ENVIRONMENTAL MICROBIOLOGY

Horizontal gene transfer of an entire metabolic pathway between a eukaryotic alga and its DNA virus

(2009) A. Monier et al.   GENOME RESEARCH

Explaining microbial population genomics through phage predation

(2009) Francisco Rodriguez-Valera et al.   NATURE REVIEWS MICROBIOLOGY

Whole-community genome amplification (WCGA) leads to compositional bias in methane-oxidizing communities as assessed bypmoA-based microarray analyses and QPCR

(2009) Paul L. E. Bodelier et al.   Environmental Microbiology Reports

Randomly Amplified Polymorphic DNA PCR as a Tool for Assessment of Marine Viral Richness

(2008) D. M. Winget et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phylogenetic Diversity of Sequences of Cyanophage Photosynthetic Gene psbA in Marine and Freshwaters

(2008) C. Chenard et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Physical and biological correlates of virus dynamics in the southern Beaufort Sea and Amundsen Gulf

(2007) Jérôme P. Payet et al.   JOURNAL OF MARINE SYSTEMS

Dissolution point and isolation robustness: Robustness criteria for general cluster analysis methods

(2007) Christian Hennig   JOURNAL OF MULTIVARIATE ANALYSIS