SNP discovery from next-generation transcriptome sequencing data and their validation using KASP assay in wheat (Triticum aestivum L.)

SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population

(2016) Gilles Boutet et al.   BMC GENOMICS

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

Nested Association Mapping of Stem Rust Resistance in Wheat Using Genotyping by Sequencing

(2016) Prabin Bajgain et al.   PLoS One

Development and validation of KASP assays for genes underpinning key economic traits in bread wheat

(2016) Awais Rasheed et al.   THEORETICAL AND APPLIED GENETICS

Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress

(2015) Ratan Chopra et al.   BMC GENOMICS

Genetic Diversity among Wheat Accessions from the USDA National Small Grains Collection

(2015) J. Michael Bonman et al.   CROP SCIENCE

An Efficient Approach for the Development of Locus Specific Primers in Bread Wheat (Triticum aestivum L.) and Its Application to Re-Sequencing of Genes Involved in Frost Tolerance

(2015) Steve Babben et al.   PLoS One

A Genome-Wide Association Study of Resistance to Stripe Rust ( Puccinia striiformis f. sp. tritici ) in a Worldwide Collection of Hexaploid Spring Wheat ( Triticum aestivum L.)

(2015) Marco Maccaferri et al.   G3-Genes Genomes Genetics

Genome-Wide Association Mapping for Leaf Tip Necrosis and Pseudo-black Chaff in Relation to Durable Rust Resistance in Wheat

(2015) Philomin Juliana et al.   Plant Genome

Recent trends and perspectives of molecular markers against fungal diseases in wheat

(2015) Umesh Goutam et al.   Frontiers in Microbiology

Assembling allopolyploid genomes: no longer formidable

(2015) Ray Ming et al.   GENOME BIOLOGY

Deep transcriptome sequencing provides new insights into the structural and functional organization of the wheat genome

(2015) Lise Pingault et al.   GENOME BIOLOGY

A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes

(2015) Katherine W Jordan et al.   GENOME BIOLOGY

A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome

(2015) Jarrod A Chapman et al.   GENOME BIOLOGY

Genome-Wide Association Mapping for Resistance to Leaf and Stripe Rust in Winter-Habit Hexaploid Wheat Landraces

(2015) Albert Kertho et al.   PLoS One

Identification and characterization of more than 4 million intervarietal SNPs across the group 7 chromosomes of bread wheat

(2014) Kaitao Lai et al.   PLANT BIOTECHNOLOGY JOURNAL

Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array

(2014) Shichen Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

Genome-Wide Association Study Reveals Novel Quantitative Trait Loci Associated with Resistance to Multiple Leaf Spot Diseases of Spring Wheat

(2014) Suraj Gurung et al.   PLoS One

Genome-Wide Association Mapping for Seedling and Adult Plant Resistance to Stripe Rust in Synthetic Hexaploid Wheat

(2014) Habtemariam Zegeye et al.   PLoS One

Slicing the wheat genome

(2014) K. Eversole et al.   SCIENCE

Genome-wide association study for grain yield and related traits in an elite spring wheat population grown in temperate irrigated environments

(2014) Sivakumar Sukumaran et al.   THEORETICAL AND APPLIED GENETICS

The Next-Generation Sequencing Revolution and Its Impact on Genomics

(2013) Daniel C. Koboldt et al.   CELL

Single nucleotide polymorphism genotyping using Kompetitive Allele Specific PCR (KASP): overview of the technology and its application in crop improvement

(2013) Kassa Semagn et al.   MOLECULAR BREEDING

Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars

(2013) C. R. Cavanagh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comprehensive Functional Analyses of Expressed Sequence Tags in Common Wheat (Triticum aestivum)

(2012) A. Manickavelu et al.   DNA RESEARCH

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Targeted spatio-temporal expression based characterization of state of infection and time-point of maximum defense in wheat NILs during leaf rust infection

(2012) Dharmendra Singh et al.   MOLECULAR BIOLOGY REPORTS

Development and validation of a breeder-friendly KASPar marker for wheat leaf rust resistance locus Lr21

(2012) Kumari Neelam et al.   MOLECULAR BREEDING

The Top 10 fungal pathogens in molecular plant pathology

(2012) RALPH DEAN et al.   MOLECULAR PLANT PATHOLOGY

PRGdb 2.0: towards a community-based database model for the analysis of R-genes in plants

(2012) Walter Sanseverino et al.   NUCLEIC ACIDS RESEARCH

Bread matters: a national initiative to profile the genetic diversity of Australian wheat

(2012) David Edwards et al.   PLANT BIOTECHNOLOGY JOURNAL

Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence

(2011) Frank M You et al.   BMC GENOMICS

Borlaug Global Rust Initiative provides momentum for wheat rust research

(2011) R. A. McIntosh et al.   EUPHYTICA

Validation and identification of molecular markers linked to the leaf rust resistance gene Lr28 in wheat

(2011) Annapurnalilly Bipinraj et al.   JOURNAL OF APPLIED GENETICS

Association Study of Resistance toSoilborne wheat mosaic virusin U.S. Winter Wheat

(2011) Dadong Zhang et al.   PHYTOPATHOLOGY

Transcript-specific, single-nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.)

(2011) Alexandra M. Allen et al.   PLANT BIOTECHNOLOGY JOURNAL

Frequent Gene Movement and Pseudogene Evolution Is Common to the Large and Complex Genomes of Wheat, Barley, and Their Relatives

(2011) Thomas Wicker et al.   PLANT CELL

In silico genotyping of the maize nested association mapping population

(2010) Baohong Guo et al.   MOLECULAR BREEDING

ConservedPrimers 2.0: A high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery

(2009) Frank M You et al.   BMC BIOINFORMATICS

SNP identification in crop plants

(2009) Martin W Ganal et al.   CURRENT OPINION IN PLANT BIOLOGY

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Marker-assisted wheat breeding: present status and future possibilities

(2009) P. K. Gupta et al.   MOLECULAR BREEDING

A genome-wide analysis of single nucleotide polymorphism diversity in the world's major cereal crops

(2009) Gary L. A. Barker et al.   PLANT BIOTECHNOLOGY JOURNAL

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

(2009) K. L. McNally et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quality scores and SNP detection in sequencing-by-synthesis systems

(2008) W. Brockman et al.   GENOME RESEARCH

The Receptor-Like Cytoplasmic Kinase (OsRLCK) Gene Family in Rice: Organization, Phylogenetic Relationship, and Expression during Development and Stress

(2008) Shubha Vij et al.   Molecular Plant