Chemical dispersants enhance the activity of oil- and gas condensate-degrading marine bacteria

Microbial community structure shifts are associated with temperature, dispersants and nutrients in crude oil-contaminated seawaters

(2016) Long Meng et al.   MARINE POLLUTION BULLETIN

The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)

(2016) Marcel Huntemann et al.   Standards in Genomic Sciences

Recovering complete and draft population genomes from metagenome datasets

(2016) Naseer Sangwan et al.   Microbiome

Microbial Responses to the Deepwater Horizon Oil Spill: From Coastal Wetlands to the Deep Sea

(2015) G.M. King et al.   Annual Review of Marine Science

Microbial Community Composition, Functions, and Activities in the Gulf of Mexico 1 Year after the Deepwater Horizon Accident

(2015) Etienne Yergeau et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fate of Surface Spills of Cold Lake Blend Diluted Bitumen Treated with Dispersant and Mineral Fines in a Wave Tank

(2015) Thomas L. King et al.   ENVIRONMENTAL ENGINEERING SCIENCE

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Diverse, rare microbial taxa responded to the Deepwater Horizon deep-sea hydrocarbon plume

(2015) Sara Kleindienst et al.   ISME Journal

Biodegradation of dispersed Macondo oil in seawater at low temperature and different oil droplet sizes

(2015) Odd G. Brakstad et al.   MARINE POLLUTION BULLETIN

Microbial Surface Colonization and Biofilm Development in Marine Environments

(2015) Hongyue Dang et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes

(2015) Jenni Hultman et al.   NATURE

Using dispersants after oil spills: impacts on the composition and activity of microbial communities

(2015) Sara Kleindienst et al.   NATURE REVIEWS MICROBIOLOGY

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chemical dispersants can suppress the activity of natural oil-degrading microorganisms

(2015) Sara Kleindienst et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics

(2015) P. N. Evans et al.   SCIENCE

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities

(2015) Dongwan D. Kang et al.   PeerJ

Microbial communities related to biodegradation of dispersed Macondo oil at low seawater temperature with Norwegian coastal seawater

(2015) Odd G. Brakstad et al.   Microbial Biotechnology

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Microbial Dynamics Following the Macondo Oil Well Blowout across Gulf of Mexico Environments

(2014) Samantha B. Joye et al.   BIOSCIENCE

The long-chain alkane metabolism network of Alcanivorax dieselolei

(2014) Wanpeng Wang et al.   Nature Communications

Diverse alkane hydroxylase genes in microorganisms and environments

(2014) Yong Nie et al.   Scientific Reports

Kinetic parameters for nutrient enhanced crude oil biodegradation in intertidal marine sediments

(2014) Arvind K. Singh et al.   Frontiers in Microbiology

The metabolic pathways and environmental controls of hydrocarbon biodegradation in marine ecosystems

(2014) Joel E. Kostka et al.   Frontiers in Microbiology

Single-cell genomics reveals features of a Colwellia species that was dominant during the Deepwater Horizon oil spill

(2014) Olivia U. Mason et al.   Frontiers in Microbiology

Effectiveness and potential ecological effects of offshore surface dispersant use during the Deepwater Horizon oil spill: a retrospective analysis of monitoring data

(2013) Adriana C. Bejarano et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

A protocol for assessing the effectiveness of oil spill dispersants in stimulating the biodegradation of oil

(2013) Roger C. Prince et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill

(2013) Adam R Rivers et al.   ISME Journal

Hydrocarbon-degrading bacteria enriched by the Deepwater Horizon oil spill identified by cultivation and DNA-SIP

(2013) Tony Gutierrez et al.   ISME Journal

Lab tests on the biodegradation of chemically dispersed oil should consider the rapid dilution that occurs at sea

(2013) Kenneth Lee et al.   MARINE POLLUTION BULLETIN

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill

(2012) Jacob Baelum et al.   ENVIRONMENTAL MICROBIOLOGY

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill

(2012) Olivia U Mason et al.   ISME Journal

Dynamic autoinoculation and the microbial ecology of a deep water hydrocarbon irruption

(2012) D. L. Valentine et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ray Meta: scalable de novo metagenome assembly and profiling

(2012) Sébastien Boisvert et al.   GENOME BIOLOGY

Effects of COREXIT® EC9500A on bacteria from a beach oiled by the Deepwater Horizon spill

(2011) LJ Hamdan et al.   AQUATIC MICROBIAL ECOLOGY

Oil Biodegradation and Bioremediation: A Tale of the Two Worst Spills in U.S. History

(2011) Ronald M. Atlas et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Composition and fate of gas and oil released to the water column during the Deepwater Horizon oil spill

(2011) C. M. Reddy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Natural gas and temperature structured a microbial community response to the Deepwater Horizon oil spill

(2011) M. C. Redmond et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Persistent Oxygen Anomaly Reveals the Fate of Spilled Methane in the Deep Gulf of Mexico

(2011) J. D. Kessler et al.   SCIENCE

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria

(2010) Terry C. Hazen et al.   SCIENCE

Propane Respiration Jump-Starts Microbial Response to a Deep Oil Spill

(2010) David L. Valentine et al.   SCIENCE

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Degradation of alkanes by bacteria

(2009) Fernando Rojo   ENVIRONMENTAL MICROBIOLOGY

Both Cycloclasticus spp. and Pseudomonas spp. as PAH-degrading bacteria in the Seine estuary (France)

(2009) Maïté Niepceron et al.   FEMS MICROBIOLOGY ECOLOGY

Biodiversity of polycyclic aromatic hydrocarbon-degrading bacteria from deep sea sediments of the Middle Atlantic Ridge

(2008) Zhisong Cui et al.   ENVIRONMENTAL MICROBIOLOGY

Database resources of the National Center for Biotechnology Information

(2008) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH

GenBank

(2008) D. A. Benson et al.   NUCLEIC ACIDS RESEARCH