Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats

Biofilm plasmids with a rhamnose operon are widely distributed determinants of the ‘swim-or-stick’ lifestyle in roseobacters

(2016) Victoria Michael et al.   ISME Journal

Large-Scale13C Flux Profiling Reveals Conservation of the Entner-Doudoroff Pathway as a Glycolytic Strategy among Marine Bacteria That Use Glucose

(2015) Arne Klingner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A recent survey of naturally occurring organohalogen compounds

(2015) Gordon W. Gribble   Environmental Chemistry

Ocean's Twelve: flagellar and biofilm chromids in the multipartite genome ofMarinovum algicola DG898 exemplify functional compartmentalization

(2015) Oliver Frank et al.   ENVIRONMENTAL MICROBIOLOGY

Selection Maintains Low Genomic GC Content in Marine SAR11 Lineages

(2015) Haiwei Luo et al.   MOLECULAR BIOLOGY AND EVOLUTION

Interaction and signalling between a cosmopolitan phytoplankton and associated bacteria

(2015) S. A. Amin et al.   NATURE

Plasmid curing and the loss of grip – The 65-kb replicon of Phaeobacter inhibens DSM 17395 is required for biofilm formation, motility and the colonization of marine algae

(2015) Oliver Frank et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Fast Dating Using Least-Squares Criteria and Algorithms

(2015) Thu-Hien To et al.   SYSTEMATIC BIOLOGY

Comparative genomics of Roseobacter clade bacteria isolated from the accessory nidamental gland of Euprymna scolopes

(2015) Andrew J. Collins et al.   Frontiers in Microbiology

The green impact: bacterioplankton response toward a phytoplankton spring bloom in the southern North Sea assessed by comparative metagenomic and metatranscriptomic approaches

(2015) Bernd Wemheuer et al.   Frontiers in Microbiology

Chemical and enzymatic fractionation of cell walls from Fucales: insights into the structure of the extracellular matrix of brown algae

(2014) Estelle Deniaud-Bouët et al.   ANNALS OF BOTANY

Fundamental shift in vitamin B12 eco-physiology of a model alga demonstrated by experimental evolution

(2014) Katherine E Helliwell et al.   ISME Journal

Trimethylamine and trimethylamine N-oxide are supplementary energy sources for a marine heterotrophic bacterium: implications for marine carbon and nitrogen cycling

(2014) Ian DEA Lidbury et al.   ISME Journal

Evolutionary analysis of a streamlined lineage of surface ocean Roseobacters

(2014) Haiwei Luo et al.   ISME Journal

Adaptation of an abundant Roseobacter RCA organism to pelagic systems revealed by genomic and transcriptomic analyses

(2014) Sonja Voget et al.   ISME Journal

Implications of streamlining theory for microbial ecology

(2014) Stephen J Giovannoni et al.   ISME Journal

The novel strainFusarium proliferatumLE1 (RCAM02409) produces α-L-fucosidase and arylsulfatase during the growth on fucoidan

(2014) Svetlana V. Shvetsova et al.   JOURNAL OF BASIC MICROBIOLOGY

Gene Regulatory and Metabolic Adaptation Processes ofDinoroseobacter shibaeDFL12Tduring Oxygen Depletion

(2014) Sebastian Laass et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Evolutionary Ecology of the Marine Roseobacter Clade

(2014) Haiwei Luo et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Master recyclers: features and functions of bacteria associated with phytoplankton blooms

(2014) Alison Buchan et al.   NATURE REVIEWS MICROBIOLOGY

BRENDA in 2015: exciting developments in its 25th year of existence

(2014) Antje Chang et al.   NUCLEIC ACIDS RESEARCH

Trimethylamine N-oxide metabolism by abundant marine heterotrophic bacteria

(2014) I. Lidbury et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metaproteomics reveals the major microbial players and their biogeochemical functions in a productive coastal system in the northern South China Sea

(2014) Hong-Po Dong et al.   Environmental Microbiology Reports

Complete genome sequence of the Phaeobacter gallaeciensis type strain CIP 105210T (= DSM 26640T = BS107T)

(2014) Oliver Frank et al.   Standards in Genomic Sciences

Genome-scale data suggest reclassifications in the Leisingera-Phaeobacter cluster including proposals for Sedimentitalea gen. nov. and Pseudophaeobacter gen. nov.

(2014) Sven Breider et al.   Frontiers in Microbiology

Linking activity and function to ecosystem dynamics in a coastal bacterioplankton community

(2014) Scott M. Gifford et al.   Frontiers in Microbiology

Extrachromosomal, extraordinary and essential—the plasmids of the Roseobacter clade

(2013) Jörn Petersen et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

When should a DDH experiment be mandatory in microbial taxonomy?

(2013) Jan P. Meier-Kolthoff et al.   ARCHIVES OF MICROBIOLOGY

Genome sequence-based species delimitation with confidence intervals and improved distance functions

(2013) Jan P Meier-Kolthoff et al.   BMC BIOINFORMATICS

Highly parallelized inference of large genome-based phylogenies

(2013) Jan P. Meier-Kolthoff et al.   CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE

MarineRhodobacteraceael-haloacid dehalogenase contains a novel His/Glu dyad that could activate the catalytic water

(2013) Halina R. Novak et al.   FEBS Journal

Inferring ancient divergences requires genes with strong phylogenetic signals

(2013) Leonidas Salichos et al.   NATURE

Poles Apart: Arctic and Antarctic Octadecabacter strains Share High Genome Plasticity and a New Type of Xanthorhodopsin

(2013) John Vollmers et al.   PLoS One

Glycolytic strategy as a tradeoff between energy yield and protein cost

(2013) A. Flamholz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of Divergent Life History Strategies in Marine Alphaproteobacteria

(2013) H. Luo et al.   mBio

Genome sequence of Phaeobacter inhibens type strain (T5T), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens

(2013) Marco Dogs et al.   Standards in Genomic Sciences

Comparative genomics of methylated amine utilization by marine Roseobacter clade bacteria and development of functional gene markers (tmm, gmaS)

(2012) Yin Chen   ENVIRONMENTAL MICROBIOLOGY

Mutualistic interactions between vitamin B12-dependent algae and heterotrophic bacteria exhibit regulation

(2012) Elena Kazamia et al.   ENVIRONMENTAL MICROBIOLOGY

Expression patterns reveal niche diversification in a marine microbial assemblage

(2012) Scott M Gifford et al.   ISME Journal

A metaproteomic assessment of winter and summer bacterioplankton from Antarctic Peninsula coastal surface waters

(2012) Timothy J Williams et al.   ISME Journal

Update on activities at the Universal Protein Resource (UniProt) in 2013

(2012)   NUCLEIC ACIDS RESEARCH

BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA

(2012) Ida Schomburg et al.   NUCLEIC ACIDS RESEARCH

Influence of vitamin B auxotrophy on nitrogen metabolism in eukaryotic phytoplankton

(2012) Erin M. Bertrand et al.   Frontiers in Microbiology

Genomic Insights into Bacterial DMSP Transformations

(2011) Mary Ann Moran et al.   Annual Review of Marine Science

The Role of B Vitamins in Marine Biogeochemistry

(2011) Sergio A. Sañudo-Wilhelmy et al.   Annual Review of Marine Science

Bacterial transport of sulfate, molybdate, and related oxyanions

(2011) Esther Aguilar-Barajas et al.   BIOMETALS

EnzymeDetector: an integrated enzyme function prediction tool and database

(2011) Susanne Quester et al.   BMC BIOINFORMATICS

Modularity of methylotrophy, revisited

(2011) Ludmila Chistoserdova   ENVIRONMENTAL MICROBIOLOGY

Genome content of uncultivated marine Roseobacters in the surface ocean

(2011) Haiwei Luo et al.   ENVIRONMENTAL MICROBIOLOGY

Protection of Bacillus subtilis against Cold Stress via Compatible-Solute Acquisition

(2011) T. Hoffmann et al.   JOURNAL OF BACTERIOLOGY

Insights into the Evolution of Vitamin B12 Auxotrophy from Sequenced Algal Genomes

(2011) K. E. Helliwell et al.   MOLECULAR BIOLOGY AND EVOLUTION

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

(2011) R. Caspi et al.   NUCLEIC ACIDS RESEARCH

Novel Insights into the Diversity of Catabolic Metabolism from Ten Haloarchaeal Genomes

(2011) Iain Anderson et al.   PLoS One

The larval sponge holobiont exhibits high thermal tolerance

(2011) Nicole S. Webster et al.   Environmental Microbiology Reports

Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough

(2011) Hervé Philippe et al.   PLOS BIOLOGY

Utilization of kelp-derived carbon sources by kelp surface-associated bacteria

(2010) MM Bengtsson et al.   AQUATIC MICROBIAL ECOLOGY

BrEPS: a flexible and automatic protocol to compute enzyme-specific sequence profiles for functional annotation

(2010) C Bannert et al.   BMC BIOINFORMATICS

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Epibacterial community patterns on marine macroalgae are host-specific but temporally variable

(2010) Tim Lachnit et al.   ENVIRONMENTAL MICROBIOLOGY

A thermophilic bacterial origin and subsequent constraints by redox, light and salinity on the evolution of the microbial mercuric reductase

(2010) Tamar Barkay et al.   ENVIRONMENTAL MICROBIOLOGY

Distribution of Roseobacter RCA and SAR11 lineages in the North Sea and characteristics of an abundant RCA isolate

(2010) Helge-Ansgar Giebel et al.   ISME Journal

Correlating carbon monoxide oxidation with cox genes in the abundant Marine Roseobacter Clade

(2010) Michael Cunliffe   ISME Journal

Genome characteristics of a generalist marine bacterial lineage

(2010) Ryan J Newton et al.   ISME Journal

A Rhodobacter capsulatus Member of a Universal Permease Family Imports Molybdate and Other Oxyanions

(2010) J. Gisin et al.   JOURNAL OF BACTERIOLOGY

Halogenated Compounds from Marine Algae

(2010) Maria Teresa Cabrita et al.   Marine Drugs

A Phylogenomic Approach to Resolve the Arthropod Tree of Life

(2010) K. Meusemann et al.   MOLECULAR BIOLOGY AND EVOLUTION

Origin and Evolution of a Novel DnaA-Like Plasmid Replication Type in Rhodobacterales

(2010) J. Petersen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenomic Analysis of Marine Roseobacters

(2010) Kai Tang et al.   PLoS One

Introducing the bacterial ‘chromid’: not a chromosome, not a plasmid

(2010) Peter W. Harrison et al.   TRENDS IN MICROBIOLOGY

Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs

(2010) Alexander F. Auch et al.   Standards in Genomic Sciences

Coral-Associated Bacteria and Their Role in the Biogeochemical Cycling of Sulfur

(2009) J.-B. Raina et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genome organisation of the marine Roseobacter clade member Marinovum algicola

(2009) Silke Pradella et al.   ARCHIVES OF MICROBIOLOGY

Diversity and evolution ofrepABCtype plasmids inRhodobacterales

(2009) Jörn Petersen et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterioplankton composition of the coastal upwelling system of ‘Ría de Vigo’, NW Spain

(2009) Jorge Alonso-Gutiérrez et al.   FEMS MICROBIOLOGY ECOLOGY

Tateyamaria pelophila sp. nov., a facultatively anaerobic alphaproteobacterium isolated from tidal-flat sediment, and emended descriptions of the genus Tateyamaria and of Tateyamaria omphalii

(2009) H. Sass et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea

(2009) Irene Wagner-Döbler et al.   ISME Journal

Bifurcated Degradative Pathway of 3-Sulfolactate in Roseovarius nubinhibens ISM via Sulfoacetaldehyde Acetyltransferase and (S)-Cysteate Sulfolyase

(2009) K. Denger et al.   JOURNAL OF BACTERIOLOGY

Genetic Determinants of Silicibacter sp. TM1040 Motility

(2009) R. Belas et al.   JOURNAL OF BACTERIOLOGY

Microbial degradation of dimethylsulphide and related C1-sulphur compounds: organisms and pathways controlling fluxes of sulphur in the biosphere

(2009) H. Schafer et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification of genes required for Pseudomonas aeruginosa carnitine catabolism

(2009) M. J. Wargo et al.   MICROBIOLOGY-SGM

Molybdenum and tungsten inCampylobacter jejuni: their physiological role and identification of separate transporters regulated by a single ModE-like protein

(2009) Michael E. Taveirne et al.   MOLECULAR MICROBIOLOGY

The genomic basis of trophic strategy in marine bacteria

(2009) F. M. Lauro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes

(2009) Konstantinos Mavromatis et al.   Standards in Genomic Sciences

Diversity, ecology, and genomics of the Roseobacter clade: a short overview

(2008) Thorsten Brinkhoff et al.   ARCHIVES OF MICROBIOLOGY

TNT, a free program for phylogenetic analysis

(2008) Pablo A. Goloboff et al.   CLADISTICS

Major differences of bacterial diversity and activity inside and outside of a natural iron-fertilized phytoplankton bloom in the Southern Ocean

(2008) Nyree J. West et al.   ENVIRONMENTAL MICROBIOLOGY

Gene transfer agent (GTA) genes reveal diverse and dynamic Roseobacter and Rhodobacter populations in the Chesapeake Bay

(2008) Yanlin Zhao et al.   ISME Journal

Complete Genome Sequence ofRhodobacter sphaeroidesKD131

(2008) Si-Kyu Lim et al.   JOURNAL OF BACTERIOLOGY

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION