A Phylogenomic Approach to Resolve the Arthropod Tree of Life

The chelifores of sea spiders (Arthropoda, Pycnogonida) are the appendages of the deutocerebral segment

(2010) Georg Brenneis et al.   EVOLUTION & DEVELOPMENT

Parametric and non-parametric masking of randomness in sequence alignments can be improved and leads to better resolved trees

(2010) Patrick Kück et al.   Frontiers in Zoology

Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

(2010) Jerome C. Regier et al.   NATURE

400 million years on six legs: On the origin and early evolution of Hexapoda

(2009) David A. Grimaldi   ARTHROPOD STRUCTURE & DEVELOPMENT

Single-copy nuclear genes resolve the phylogeny of the holometabolous insects

(2009) Brian M Wiegmann et al.   BMC BIOLOGY

On the phylogenetic position of Myzostomida: Can 77 genes get it wrong?

(2009) Christoph Bleidorn et al.   BMC EVOLUTIONARY BIOLOGY

Can comprehensive background knowledge be incorporated into substitution models to improve phylogenetic analyses? A case study on major arthropod relationships

(2009) Björn M von Reumont et al.   BMC EVOLUTIONARY BIOLOGY

HaMStR: Profile hidden markov model based search for orthologs in ESTs

(2009) Ingo Ebersberger et al.   BMC EVOLUTIONARY BIOLOGY

Phylogenomics Revives Traditional Views on Deep Animal Relationships

(2009) Hervé Philippe et al.   CURRENT BIOLOGY

The post-embryonic development of Remipedia (Crustacea)—additional results and new insights

(2009) Stefan Koenemann et al.   DEVELOPMENT GENES AND EVOLUTION

Hemocyanin Suggests a Close Relationship of Remipedia and Hexapoda

(2009) B. Ertas et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Phylogenomic Approach to Resolve the Basal Pterygote Divergence

(2009) S. Simon et al.   MOLECULAR BIOLOGY AND EVOLUTION

Nearly complete rRNA genes assembled from across the metazoan animals: Effects of more taxa, a structure-based alignment, and paired-sites evolutionary models on phylogeny reconstruction

(2009) Jon Mallatt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The origin and evolution of arthropods

(2009) Graham E. Budd et al.   NATURE

Velvet worm development links myriapods with chelicerates

(2009) G. Mayer et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Assessing the root of bilaterian animals with scalable phylogenomic methods

(2009) A. Hejnol et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Monte Carlo Approach Successfully Identifies Randomness in Multiple Sequence Alignments : A More Objective Means of Data Exclusion

(2009) Bernhard Misof et al.   SYSTEMATIC BIOLOGY

Phyutility: a phyloinformatics tool for trees, alignments and molecular data

(2008) S. A. Smith et al.   BIOINFORMATICS

Revealing pancrustacean relationships: Phylogenetic analysis of ribosomal protein genes places Collembola (springtails) in a monophyletic Hexapoda and reinforces the discrepancy between mitochondrial and nuclear DNA markers

(2008) MJTN Timmermans et al.   BMC EVOLUTIONARY BIOLOGY

Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?

(2008) Stefanie Hartmann et al.   BMC EVOLUTIONARY BIOLOGY

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS

Additional molecular support for the new chordate phylogeny

(2008) Frédéric Delsuc et al.   GENESIS

Recent advances in crustacean genomics

(2008) J. H. Stillman et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Testing the new animal phylogeny: A phylum level molecular analysis of the animal kingdom

(2008) S BOURLAT et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Broad phylogenomic sampling improves resolution of the animal tree of life

(2008) Casey W. Dunn et al.   NATURE

The evolution of the Ecdysozoa

(2008) M. J Telford et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Improvement of molecular phylogenetic inference and the phylogeny of Bilateria

(2008) N. Lartillot et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Resolving Arthropod Phylogeny: Exploring Phylogenetic Signal within 41 kb of Protein-Coding Nuclear Gene Sequence

(2008) Jerome C. Regier et al.   SYSTEMATIC BIOLOGY

Testing for misleading effects in the phylogenetic reconstruction of ancient lineages of hexapods: influence of character dependence and character choice in analyses of 28S rRNA sequences

(2008) Emiliano Dell’Ampio et al.   ZOOLOGICA SCRIPTA

A forgotten homology supporting the monophyly of Tracheata: The subcoxa of insects and myriapods re-visited

(2008) Holger Bäcker et al.   ZOOLOGISCHER ANZEIGER

Ancient Rapid Radiations of Insects: Challenges for Phylogenetic Analysis

(2007) James B. Whitfield et al.   Annual Review of Entomology

Filling the gap between identified neuroblasts and neurons in crustaceans adds new support for Tetraconata

(2007) P. Ungerer et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES