Explaining microbial genomic diversity in light of evolutionary ecology

Synchronous Waves of Failed Soft Sweeps in the Laboratory: Remarkably Rampant Clonal Interference of Alleles at a Single Locus

(2013) M.-C. Lee et al.   GENETICS

Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations

(2013) Gregory I. Lang et al.   NATURE

Fortifying the barrier: the impact of lipid A remodelling on bacterial pathogenesis

(2013) Brittany D. Needham et al.   NATURE REVIEWS MICROBIOLOGY

Horizontal gene transfer and the evolution of bacterial and archaeal population structure

(2013) Martin F. Polz et al.   TRENDS IN GENETICS

The quorum sensing diversity within and between ecotypes of Bacillus subtilis

(2012) Polonca Stefanic et al.   ENVIRONMENTAL MICROBIOLOGY

Antagonism influences assembly of a Bacillus guild in a local community and is depicted as a food-chain network

(2012) Rocío-Anaís Pérez-Gutiérrez et al.   ISME Journal

Bacterial Diversity Stabilizes Community Productivity

(2012) Nico Eisenhauer et al.   PLoS One

The Passive Yet Successful Way of Planktonic Life: Genomic and Experimental Analysis of the Ecology of a Free-Living Polynucleobacter Population

(2012) Martin W. Hahn et al.   PLoS One

Genotypic Diversity Effects on the Performance of Taraxacum officinale Populations Increase with Time and Environmental Favorability

(2012) Emily B. M. Drummond et al.   PLoS One

Genetic Diversity and Ecosystem Functioning in the Face of Multiple Stressors

(2012) Fabian Roger et al.   PLoS One

Public good dynamics drive evolution of iron acquisition strategies in natural bacterioplankton populations

(2012) O. X. Cordero et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ecological Populations of Bacteria Act as Socially Cohesive Units of Antibiotic Production and Resistance

(2012) O. X. Cordero et al.   SCIENCE

Marine Microbes See a Sea of Gradients

(2012) R. Stocker   SCIENCE

Population Genomics of Early Events in the Ecological Differentiation of Bacteria

(2012) B. J. Shapiro et al.   SCIENCE

The Black Queen Hypothesis: Evolution of Dependencies through Adaptive Gene Loss

(2012) J. J. Morris et al.   mBio

Bacteriocin-mediated interactions within and between coexisting species

(2012) Hadas Hawlena et al.   Ecology and Evolution

Patterns of Gene Flow Define Species of Thermophilic Archaea

(2012) Hinsby Cadillo-Quiroz et al.   PLOS BIOLOGY

Intraspecific genotypic richness and relatedness predict the invasibility of microbial communities

(2011) Alexandre Jousset et al.   ISME Journal

Understanding microbial cooperation

(2011) James A. Damore et al.   JOURNAL OF THEORETICAL BIOLOGY

Ecology drives a global network of gene exchange connecting the human microbiome

(2011) Chris S. Smillie et al.   NATURE

Rapid Pneumococcal Evolution in Response to Clinical Interventions

(2011) N. J. Croucher et al.   SCIENCE

Why intraspecific trait variation matters in community ecology

(2011) Daniel I. Bolnick et al.   TRENDS IN ECOLOGY & EVOLUTION

Local Mobile Gene Pools Rapidly Cross Species Boundaries To Create Endemicity within Global Vibrio cholerae Populations

(2011) Y. Boucher et al.   mBio

Ecology of Speciation in the Genus Bacillus

(2010) N. Connor et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Siderophores from Neighboring Organisms Promote the Growth of Uncultured Bacteria

(2010) Anthony D'Onofrio et al.   CHEMISTRY & BIOLOGY

A direct comparison of the consequences of plant genotypic and species diversity on communities and ecosystem function

(2010) Susan C. Cook-Patton et al.   ECOLOGY

An integrative approach to understanding microbial diversity: from intracellular mechanisms to community structure

(2010) Ivana Gudelj et al.   ECOLOGY LETTERS

Metapopulation structure of Vibrionaceae among coastal marine invertebrates

(2010) Sarah P. Preheim et al.   ENVIRONMENTAL MICROBIOLOGY

O-antigen diversity and lateral transfer of the wbe region among Vibrio splendidus isolates

(2010) Hans Wildschutte et al.   ENVIRONMENTAL MICROBIOLOGY

COEXISTENCE OF COOPERATION AND DEFECTION IN PUBLIC GOODS GAMES

(2010) Marco Archetti et al.   EVOLUTION

Evolutionary divergence and biogeography of sympatric niche-differentiated bacterial populations

(2010) Brian B Oakley et al.   ISME Journal

AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature

(2010) Vincent J Denef et al.   ISME Journal

Trade-Offs between Competition and Defense Specialists among Unicellular Planktonic Organisms: the "Killing the Winner" Hypothesis Revisited

(2010) C. Winter et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Population diversity and the portfolio effect in an exploited species

(2010) Daniel E. Schindler et al.   NATURE

Bacteriophage resistance mechanisms

(2010) Simon J. Labrie et al.   NATURE REVIEWS MICROBIOLOGY

Non-Additive Effects of Genotypic Diversity Increase Floral Abundance and Abundance of Floral Visitors

(2010) Mark A. Genung et al.   PLoS One

Ecosystem-specific selection pressures revealed through comparative population genomics

(2010) M. L. Coleman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multidrug-Resistant Enterococci Lack CRISPR-cas

(2010) K. L. Palmer et al.   mBio

Social Conflict in Centimeter-and Global-Scale Populations of the Bacterium Myxococcus xanthus

(2009) Michiel Vos et al.   CURRENT BIOLOGY

Ecological impacts of genotypic diversity in the clonal seagrassZostera marina

(2009) A. Randall Hughes et al.   ECOLOGY

Explaining microbial population genomics through phage predation

(2009) Francisco Rodriguez-Valera et al.   NATURE REVIEWS MICROBIOLOGY

The impact of long-distance horizontal gene transfer on prokaryotic genome size

(2009) O. X. Cordero et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Optimization of DNA polymerase mutation rates during bacterial evolution

(2009) E. Loh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity

(2009) C. Fraser et al.   SCIENCE

Looking for Darwin's footprints in the microbial world

(2009) B. Jesse Shapiro et al.   TRENDS IN MICROBIOLOGY

Frequency-dependent selection by wild birds promotes polymorphism in model salamanders

(2009) Benjamin M Fitzpatrick et al.   BMC ECOLOGY

Particle Aggregation

(2008) Adrian B. Burd et al.   Annual Review of Marine Science

Comparative genomics: the bacterial pan-genome

(2008) Hervé Tettelin et al.   CURRENT OPINION IN MICROBIOLOGY

Ecological consequences of genetic diversity

(2008) A. Randall Hughes et al.   ECOLOGY LETTERS

A comparison of homologous recombination rates in bacteria and archaea

(2008) Michiel Vos et al.   ISME Journal

Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter

(2008) Elena Ivars-Martinez et al.   ISME Journal

Identifying the fundamental units of bacterial diversity: A paradigm shift to incorporate ecology into bacterial systematics

(2008) A. Koeppel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Resource Partitioning and Sympatric Differentiation Among Closely Related Bacterioplankton

(2008) D. E. Hunt et al.   SCIENCE

Population Genomic Analysis of Strain Variation in Leptospirillum Group II Bacteria Involved in Acid Mine Drainage Formation

(2008) Sheri L Simmons et al.   PLOS BIOLOGY