标题
Radiogenomic Analysis of Oncological Data: A Technical Survey
作者
关键词
-
出版物
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
Volume 18, Issue 4, Pages 805
出版商
MDPI AG
发表日期
2017-04-12
DOI
10.3390/ijms18040805
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Volume of high-risk intratumoral subregions at multi-parametric MR imaging predicts overall survival and complements molecular analysis of glioblastoma
- (2017) Yi Cui et al. EUROPEAN RADIOLOGY
- Predictive radiogenomics modeling of EGFR mutation status in lung cancer
- (2017) Olivier Gevaert et al. Scientific Reports
- Volumetric Tumor Response and Progression in EGFR-mutant NSCLC Patients Treated with Erlotinib or Gefitinib
- (2016) Mizuki Nishino et al. ACADEMIC RADIOLOGY
- Quantitative Multiparametric MRI Features and PTEN Expression of Peripheral Zone Prostate Cancer: A Pilot Study
- (2016) Stephanie M. McCann et al. AMERICAN JOURNAL OF ROENTGENOLOGY
- Imaging genomics in cancer research: limitations and promises
- (2016) Harrison X Bai et al. BRITISH JOURNAL OF RADIOLOGY
- Correlation of the SUVmax of FDG-PET and ADC values of diffusion-weighted MR imaging with pathologic prognostic factors in breast carcinoma
- (2016) Kazuhiro Kitajima et al. EUROPEAN JOURNAL OF RADIOLOGY
- Characterization of tumor and adjacent peritumoral stroma in patients with breast cancer using high-resolution diffusion-weighted imaging: Correlation with pathologic biomarkers
- (2016) Hee Jung Shin et al. EUROPEAN JOURNAL OF RADIOLOGY
- PI-RADS Prostate Imaging – Reporting and Data System: 2015, Version 2
- (2016) Jeffrey C. Weinreb et al. EUROPEAN UROLOGY
- Breast cancer molecular subtype classifier that incorporates MRI features
- (2016) Elizabeth J. Sutton et al. JOURNAL OF MAGNETIC RESONANCE IMAGING
- A combinatorial radiographic phenotype may stratify patient survival and be associated with invasion and proliferation characteristics in glioblastoma
- (2016) Arvind Rao et al. JOURNAL OF NEUROSURGERY
- MO-DE-207B-05: Predicting Gene Mutations in Renal Cell Carcinoma Based On CT Imaging Features: Validation Using TCGA-TCIA Datasets
- (2016) X Chen et al. MEDICAL PHYSICS
- Multimodal MRI features predict isocitrate dehydrogenase genotype in high-grade gliomas
- (2016) Biqi Zhang et al. NEURO-ONCOLOGY
- Radiogenomics to characterize regional genetic heterogeneity in glioblastoma
- (2016) Leland S. Hu et al. NEURO-ONCOLOGY
- Predicting the Future — Big Data, Machine Learning, and Clinical Medicine
- (2016) Ziad Obermeyer et al. NEW ENGLAND JOURNAL OF MEDICINE
- Machine Learning in Genomic Medicine: A Review of Computational Problems and Data Sets
- (2016) Michael K. K. Leung et al. PROCEEDINGS OF THE IEEE
- Radiogenomics of Glioblastoma: Machine Learning–based Classification of Molecular Characteristics by Using Multiparametric and Multiregional MR Imaging Features
- (2016) Philipp Kickingereder et al. RADIOLOGY
- Radiomics: Images Are More than Pictures, They Are Data
- (2016) Robert J. Gillies et al. RADIOLOGY
- Molecular differences between cerebral blood volume and vessel size in glioblastoma multiforme
- (2016) Dieter Henrik Heiland et al. Oncotarget
- Association of multiparametric MRI quantitative imaging features with prostate cancer gene expression in MRI-targeted prostate biopsies
- (2016) Radka Stoyanova et al. Oncotarget
- Leveraging Imperfect Data Sets to Draw New Conclusions: Radiogenomics’ True Value?
- (2016) Li Yang et al. Journal of the American College of Radiology
- RNA-Seq methods for transcriptome analysis
- (2016) Radmila Hrdlickova et al. Wiley Interdisciplinary Reviews-RNA
- Hybrid PET/MR Imaging and Brain Connectivity
- (2016) Marco Aiello et al. Frontiers in Neuroscience
- The Potential of Radiomic-Based Phenotyping in Precision Medicine
- (2016) Hugo J. W. L. Aerts JAMA Oncology
- Radiogenomics Monitoring in Breast Cancer Identifies Metabolism and Immune Checkpoints as Early Actionable Mechanisms of Resistance to Anti-angiogenic Treatment
- (2016) Shaveta Mehta et al. EBioMedicine
- Exploratory Study to Identify Radiomics Classifiers for Lung Cancer Histology
- (2016) Weimiao Wu et al. Frontiers in Oncology
- A Study on the Basic Criteria for Selecting Heterogeneity Parameters of F18-FDG PET Images
- (2016) Attila Forgacs et al. PLoS One
- Defining a Radiomic Response Phenotype: A Pilot Study using targeted therapy in NSCLC
- (2016) Hugo J. W. L. Aerts et al. Scientific Reports
- Radiogenomics of clear cell renal cell carcinoma: preliminary findings of The Cancer Genome Atlas–Renal Cell Carcinoma (TCGA–RCC) Imaging Research Group
- (2015) Atul B. Shinagare et al. ABDOMINAL IMAGING
- Elasticity of Nanoparticles Influences Their Blood Circulation, Phagocytosis, Endocytosis, and Targeting
- (2015) Aaron C. Anselmo et al. ACS Nano
- Quantitative MRI morphology of invasive breast cancer: correlation with immunohistochemical biomarkers and subtypes
- (2015) Min Sun Bae et al. ACTA RADIOLOGICA
- Distinct clinicopathological phenotype of hepatocellular carcinoma with ethoxybenzyl-magnetic resonance imaging hyperintensity: association with gene expression signature
- (2015) Tomoya Miura et al. AMERICAN JOURNAL OF SURGERY
- Microarray experiments and factors which affect their reliability
- (2015) Roman Jaksik et al. Biology Direct
- Breast cancer in very young women (
- (2015) Yeong Yi An et al. EUROPEAN JOURNAL OF RADIOLOGY
- Correlation between 18F-FDG uptake on PET/CT and prognostic factors in triple-negative breast cancer
- (2015) Hye Ryoung Koo et al. EUROPEAN RADIOLOGY
- Transcriptomics in cancer diagnostics: developments in technology, clinical research and commercialization
- (2015) Monica Sager et al. EXPERT REVIEW OF MOLECULAR DIAGNOSTICS
- Breast cancer subtype intertumor heterogeneity: MRI-based features predict results of a genomic assay
- (2015) Elizabeth J. Sutton et al. JOURNAL OF MAGNETIC RESONANCE IMAGING
- Computational approach to radiogenomics of breast cancer: Luminal A and luminal B molecular subtypes are associated with imaging features on routine breast MRI extracted using computer vision algorithms
- (2015) Lars J. Grimm et al. JOURNAL OF MAGNETIC RESONANCE IMAGING
- Addition of MR imaging features and genetic biomarkers strengthens glioblastoma survival prediction in TCGA patients
- (2015) Manal Nicolasjilwan et al. JOURNAL OF NEURORADIOLOGY
- StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
- (2015) Mihaela Pertea et al. NATURE BIOTECHNOLOGY
- Somatic mutations associated with MRI-derived volumetric features in glioblastoma
- (2015) David A. Gutman et al. NEURORADIOLOGY
- MR mammography using diffusion-weighted imaging in evaluating breast cancer: a correlation with proliferation index
- (2015) Cristina Molinari et al. Radiologia Medica
- Breast Cancer: Radiogenomic Biomarker Reveals Associations among Dynamic Contrast-enhanced MR Imaging, Long Noncoding RNA, and Metastasis
- (2015) Shota Yamamoto et al. RADIOLOGY
- The Radiogenomic Risk Score: Construction of a Prognostic Quantitative, Noninvasive Image-based Molecular Assay for Renal Cell Carcinoma
- (2015) Neema Jamshidi et al. RADIOLOGY
- Is there a causal relationship between genetic changes and radiomics-based image features? An in vivo preclinical experiment with doxycycline inducible GADD34 tumor cells
- (2015) Kranthi Marella Panth et al. RADIOTHERAPY AND ONCOLOGY
- Base resolution methylome profiling: considerations in platform selection, data preprocessing and analysis
- (2015) Zhifu Sun et al. Epigenomics
- Deciphering Genomic Underpinnings of Quantitative MRI-based Radiomic Phenotypes of Invasive Breast Carcinoma
- (2015) Yitan Zhu et al. Scientific Reports
- Radiogenomics: What It Is and Why It Is Important
- (2015) Maciej A. Mazurowski Journal of the American College of Radiology
- Machine Learning methods for Quantitative Radiomic Biomarkers
- (2015) Chintan Parmar et al. Scientific Reports
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads
- (2014) Y. Xie et al. BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Imaging genomic mapping of an invasive MRI phenotype predicts patient outcome and metabolic dysfunction: a TCGA glioma phenotype research group project
- (2014) Rivka R Colen et al. BMC Medical Genomics
- Imaging Intratumor Heterogeneity: Role in Therapy Response, Resistance, and Clinical Outcome
- (2014) J. P. B. O'Connor et al. CLINICAL CANCER RESEARCH
- Correlation between 3 T apparent diffusion coefficient values and grading of invasive breast carcinoma
- (2014) Valentina Cipolla et al. EUROPEAN JOURNAL OF RADIOLOGY
- RNA-Seq for the identification of novel Mediator transcripts in endothelial progenitor cells
- (2014) Monica Rienzo et al. GENE
- Test–Retest Reproducibility Analysis of Lung CT Image Features
- (2014) Yoganand Balagurunathan et al. JOURNAL OF DIGITAL IMAGING
- Next-generation sequencing technologies: breaking the sound barrier of human genetics
- (2014) E. M. Bahassi et al. MUTAGENESIS
- Genome-guided transcript assembly by integrative analysis of RNA sequence data
- (2014) Nathan Boley et al. NATURE BIOTECHNOLOGY
- Integrated RNA and DNA sequencing improves mutation detection in low purity tumors
- (2014) Matthew D. Wilkerson et al. NUCLEIC ACIDS RESEARCH
- Robust Radiomics Feature Quantification Using Semiautomatic Volumetric Segmentation
- (2014) Chintan Parmar et al. PLoS One
- Glioblastoma Multiforme: Exploratory Radiogenomic Analysis by Using Quantitative Image Features
- (2014) Olivier Gevaert et al. RADIOLOGY
- Radiogenomic Analysis of Breast Cancer: Luminal B Molecular Subtype Is Associated with Enhancement Dynamics at MR Imaging
- (2014) Maciej A. Mazurowski et al. RADIOLOGY
- Behind the Numbers: Decoding Molecular Phenotypes with Radiogenomics—Guiding Principles and Technical Considerations
- (2014) Michael D. Kuo et al. RADIOLOGY
- Radiologically Defined Ecological Dynamics and Clinical Outcomes in Glioblastoma Multiforme: Preliminary Results
- (2014) Mu Zhou et al. Translational Oncology
- Intratumoral heterogeneity of the distribution of kinetic parameters in breast cancer: comparison based on the molecular subtypes of invasive breast cancer
- (2014) Ken Yamaguchi et al. Breast Cancer
- Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach
- (2014) Hugo J. W. L. Aerts et al. Nature Communications
- Stability of FDG-PET Radiomics features: An integrated analysis of test-retest and inter-observer variability
- (2013) Ralph T. H. Leijenaar et al. ACTA ONCOLOGICA
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- 13th St. Gallen International Breast Cancer Conference 2013: Primary Therapy of Early Breast Cancer Evidence, Controversies, Consensus - Opinion of a German Team of Experts (Zurich 2013)
- (2013) Michael Untch* et al. Breast Care
- MR Imaging Features of Triple-Negative Breast Cancers
- (2013) Janice S. Sung et al. Breast Journal
- 18F-FDG uptake in breast cancer correlates with immunohistochemically defined subtypes
- (2013) Hye Ryoung Koo et al. EUROPEAN RADIOLOGY
- NF-κB protein expression associates with 18F-FDG PET tumor uptake in non-small cell lung cancer: A radiogenomics validation study to understand tumor metabolism
- (2013) Viswam S. Nair et al. LUNG CANCER
- In situ sequencing for RNA analysis in preserved tissue and cells
- (2013) Rongqin Ke et al. NATURE METHODS
- Assessment of transcript reconstruction methods for RNA-seq
- (2013) Tamara Steijger et al. NATURE METHODS
- Systematic evaluation of spliced alignment programs for RNA-seq data
- (2013) Pär G Engström et al. NATURE METHODS
- Quantitative assessment of single-cell RNA-sequencing methods
- (2013) Angela R Wu et al. NATURE METHODS
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
- Identifying the mesenchymal molecular subtype of glioblastoma using quantitative volumetric analysis of anatomic magnetic resonance images
- (2013) Kourosh M. Naeini et al. NEURO-ONCOLOGY
- Imaging descriptors improve the predictive power of survival models for glioblastoma patients
- (2013) M. A. Mazurowski et al. NEURO-ONCOLOGY
- Quantitative Imaging in Cancer Evolution and Ecology
- (2013) Robert A. Gatenby et al. RADIOLOGY
- Illuminating Radiogenomic Characteristics of Glioblastoma Multiforme through Integration of MR Imaging, Messenger RNA Expression, and DNA Copy Number Variation
- (2013) Neema Jamshidi et al. RADIOLOGY
- Radiogenomics of Clear Cell Renal Cell Carcinoma: Associations between CT Imaging Features and Mutations
- (2013) Christoph A. Karlo et al. RADIOLOGY
- Correlation of Perfusion Parameters with Genes Related to Angiogenesis Regulation in Glioblastoma: A Feasibility Study
- (2012) R. Jain et al. AMERICAN JOURNAL OF NEURORADIOLOGY
- Radiogenomic Analysis of Breast Cancer Using MRI: A Preliminary Study to Define the Landscape
- (2012) Shota Yamamoto et al. AMERICAN JOURNAL OF ROENTGENOLOGY
- RSeQC: quality control of RNA-seq experiments
- (2012) Liguo Wang et al. BIOINFORMATICS
- Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels
- (2012) Marcel H. Schulz et al. BIOINFORMATICS
- Qualimap: evaluating next-generation sequencing alignment data
- (2012) Fernando García-Alcalde et al. BIOINFORMATICS
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Radiomics: Extracting more information from medical images using advanced feature analysis
- (2012) Philippe Lambin et al. EUROPEAN JOURNAL OF CANCER
- iReckon: Simultaneous isoform discovery and abundance estimation from RNA-seq data
- (2012) A. M. Mezlini et al. GENOME RESEARCH
- Radiomics: the process and the challenges
- (2012) Virendra Kumar et al. MAGNETIC RESONANCE IMAGING
- Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome
- (2012) Zhiyu Peng et al. NATURE BIOTECHNOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- A Novel Volume-Age-KPS (VAK) Glioblastoma Classification Identifies a Prognostic Cognate microRNA-Gene Signature
- (2012) Pascal O. Zinn et al. PLoS One
- Non–Small Cell Lung Cancer: Identifying Prognostic Imaging Biomarkers by Leveraging Public Gene Expression Microarray Data—Methods and Preliminary Results
- (2012) Olivier Gevaert et al. RADIOLOGY
- A semiautomatic CT-based ensemble segmentation of lung tumors: Comparison with oncologists’ delineations and with the surgical specimen
- (2012) Emmanuel Rios Velazquez et al. RADIOTHERAPY AND ONCOLOGY
- Identification of novel transcripts in annotated genomes using RNA-Seq
- (2011) A. Roberts et al. BIOINFORMATICS
- 18F-Fluorodeoxy-glucose Positron Emission Tomography Marks MYC-Overexpressing Human Basal-Like Breast Cancers
- (2011) N. Palaskas et al. CANCER RESEARCH
- Non-invasive detection of 2-hydroxyglutarate and other metabolites in IDH1 mutant glioma patients using magnetic resonance spectroscopy
- (2011) Whitney B. Pope et al. JOURNAL OF NEURO-ONCOLOGY
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Radiogenomic Mapping of Edema/Cellular Invasion MRI-Phenotypes in Glioblastoma Multiforme
- (2011) Pascal O. Zinn et al. PLoS One
- Identification of fusion genes in breast cancer by paired-end RNA-sequencing
- (2011) Henrik Edgren et al. GENOME BIOLOGY
- CT Tumor Volume Measurement in Advanced Non-small-cell Lung Cancer
- (2010) Mizuki Nishino et al. ACADEMIC RADIOLOGY
- Variability of textural features in FDG PET images due to different acquisition modes and reconstruction parameters
- (2010) Paulina E. Galavis et al. ACTA ONCOLOGICA
- Uncovering the Complexity of Transcriptomes with RNA-Seq
- (2010) Valerio Costa et al. JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY
- 18F-FDG PET of Locally Invasive Breast Cancer and Association of Estrogen Receptor Status with Standardized Uptake Value: Microarray and Immunohistochemical Analysis
- (2010) J. R. Osborne et al. JOURNAL OF NUCLEAR MEDICINE
- Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
- (2010) Mitchell Guttman et al. NATURE BIOTECHNOLOGY
- Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort
- (2010) Li Shen et al. NEUROIMAGE
- Glioblastoma Multiforme Regional Genetic and Cellular Expression Patterns: Influence on Anatomic and Physiologic MR Imaging
- (2010) Ramon F. Barajas et al. RADIOLOGY
- Improving target delineation on 4-dimensional CT scans in stage I NSCLC using a deformable registration tool
- (2010) Iris E. van Dam et al. RADIOTHERAPY AND ONCOLOGY
- Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data
- (2009) Jacob F. Degner et al. BIOINFORMATICS
- Genome-wide association analysis by lasso penalized logistic regression
- (2009) Tong Tong Wu et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Next-Generation Sequencing: From Basic Research to Diagnostics
- (2009) K. V. Voelkerding et al. CLINICAL CHEMISTRY
- Degree of Tumor FDG Uptake Correlates with Proliferation Index in Triple Negative Breast Cancer
- (2009) Julia Tchou et al. MOLECULAR IMAGING AND BIOLOGY
- Sequencing technologies — the next generation
- (2009) Michael L. Metzker NATURE REVIEWS GENETICS
- Triple-Negative Breast Cancer: Correlation between MR Imaging and Pathologic Findings
- (2009) Takayoshi Uematsu et al. RADIOLOGY
- Interobserver and Intraobserver Variation Among Experts in the Diagnosis of Thyroid Follicular Lesions With Borderline Nuclear Features of Papillary Carcinoma
- (2008) Tarik M. Elsheikh et al. AMERICAN JOURNAL OF CLINICAL PATHOLOGY
- RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
- (2008) J. C. Marioni et al. GENOME RESEARCH
- Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
- (2008) Qun Pan et al. NATURE GENETICS
- Stem cell transcriptome profiling via massive-scale mRNA sequencing
- (2008) Nicole Cloonan et al. NATURE METHODS
- Mapping and quantifying mammalian transcriptomes by RNA-Seq
- (2008) Ali Mortazavi et al. NATURE METHODS
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
- Identification of noninvasive imaging surrogates for brain tumor gene-expression modules
- (2008) Maximilian Diehn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Relationship between Gene Expression and Enhancement in Glioblastoma Multiforme: Exploratory DNA Microarray Analysis
- (2008) Whitney B. Pope et al. RADIOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started