标题
Chromatin accessibility dynamics reveal novel functional enhancers inC. elegans
作者
关键词
-
出版物
GENOME RESEARCH
Volume 27, Issue 12, Pages 2096-2107
出版商
Cold Spring Harbor Laboratory
发表日期
2017-11-16
DOI
10.1101/gr.226233.117
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Genome-wide positioning of bivalent mononucleosomes
- (2016) Subhojit Sen et al. BMC Medical Genomics
- Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution
- (2016) M Ryan Corces et al. NATURE GENETICS
- Multifunctional role of the transcription factor Blimp-1 in coordinating plasma cell differentiation
- (2016) Martina Minnich et al. NATURE IMMUNOLOGY
- StableCaenorhabditis eleganschromatin domains separate broadly expressed and developmentally regulated genes
- (2016) Kenneth J. Evans et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Nucleosome Density ChIP-Seq Identifies Distinct Chromatin Modification Signatures Associated with MNase Accessibility
- (2016) Alireza Lorzadeh et al. Cell Reports
- Zelda overcomes the high intrinsic nucleosome barrier at enhancers duringDrosophilazygotic genome activation
- (2015) Yujia Sun et al. GENOME RESEARCH
- Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions
- (2015) Alicia N. Schep et al. GENOME RESEARCH
- Using transgenic reporter assays to functionally characterize enhancers in animals
- (2015) Evgeny Z. Kvon GENOMICS
- BAF250a Protein Regulates Nucleosome Occupancy and Histone Modifications in Priming Embryonic Stem Cell Differentiation
- (2015) Ienglam Lei et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Single-cell chromatin accessibility reveals principles of regulatory variation
- (2015) Jason D. Buenrostro et al. NATURE
- Condensin-driven remodelling of X chromosome topology during dosage compensation
- (2015) Emily Crane et al. NATURE
- The selection and function of cell type-specific enhancers
- (2015) Sven Heinz et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- FlyBase: establishing a Gene Group resource forDrosophila melanogaster
- (2015) Helen Attrill et al. NUCLEIC ACIDS RESEARCH
- Genome-Wide Prediction and Validation of Intergenic Enhancers in Arabidopsis Using Open Chromatin Signatures
- (2015) Bo Zhu et al. PLANT CELL
- The Arabidopsis GAGA-Binding Factor BASIC PENTACYSTEINE6 Recruits the POLYCOMB-REPRESSIVE COMPLEX1 Component LIKE HETEROCHROMATIN PROTEIN1 to GAGA DNA Motifs
- (2015) Andreas Hecker et al. PLANT PHYSIOLOGY
- Recruitment of RNA polymerase II by the pioneer transcription factor PHA-4
- (2015) H.- T. Hsu et al. SCIENCE
- Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing
- (2015) D. A. Cusanovich et al. SCIENCE
- Mapping and analysis of Caenorhabditis elegans transcription factor sequence specificities
- (2015) Kamesh Narasimhan et al. eLife
- Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity
- (2014) Matthew T. Weirauch et al. CELL
- Expanding the roles of chromatin insulators in nuclear architecture, chromatin organization and genome function
- (2014) Todd Schoborg et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Regulatory analysis of the C. elegans genome with spatiotemporal resolution
- (2014) Carlos L. Araya et al. NATURE
- Comparative analysis of metazoan chromatin organization
- (2014) Joshua W. K. Ho et al. NATURE
- Comparative analysis of the transcriptome across distant species
- (2014) Mark B. Gerstein et al. NATURE
- Comparative analysis of regulatory information and circuits across distant species
- (2014) Alan P. Boyle et al. NATURE
- Chromatin state dynamics during blood formation
- (2014) D. Lara-Astiaso et al. SCIENCE
- Chromatin accessibility: a window into the genome
- (2014) Maria Tsompana et al. Epigenetics & Chromatin
- Nucleosomal occupancy changes locally over key regulatory regions during cell differentiation and reprogramming
- (2014) Jason A. West et al. Nature Communications
- Developmental Fate and Cellular Maturity Encoded in Human Regulatory DNA Landscapes
- (2013) Andrew B. Stergachis et al. CELL
- Lamin A/C-promoter interactions specify chromatin state-dependent transcription outcomes
- (2013) E. Lund et al. GENOME RESEARCH
- The landscape of RNA polymerase II transcription initiation in C. elegans reveals promoter and enhancer architectures
- (2013) R. A.- J. Chen et al. GENOME RESEARCH
- Variation in chromatin accessibility in human kidney cancer links H3K36 methyltransferase loss with widespread RNA processing defects
- (2013) J. M. Simon et al. GENOME RESEARCH
- DAF-16 employs the chromatin remodeller SWI/SNF to promote stress resistance and longevity
- (2013) Christian G. Riedel et al. NATURE CELL BIOLOGY
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- Predicting enhancer transcription and activity from chromatin modifications
- (2013) Yun Zhu et al. NUCLEIC ACIDS RESEARCH
- Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq
- (2013) C. D. Arnold et al. SCIENCE
- Vertebrate GAGA factor associated insulator elements demarcate homeotic genes in the HOX clusters
- (2013) Surabhi Srivastava et al. Epigenetics & Chromatin
- Condensin controls recruitment of RNA polymerase II to achieve nematode X-chromosome dosage compensation
- (2013) William S Kruesi et al. eLife
- DANPOS: Dynamic analysis of nucleosome position and occupancy by sequencing
- (2012) K. Chen et al. GENOME RESEARCH
- Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development
- (2012) Stefan Bonn et al. NATURE GENETICS
- ChromHMM: automating chromatin-state discovery and characterization
- (2012) Jason Ernst et al. NATURE METHODS
- ChIP–seq and beyond: new and improved methodologies to detect and characterize protein–DNA interactions
- (2012) Terrence S. Furey NATURE REVIEWS GENETICS
- Analysis of C. elegans intestinal gene expression and polyadenylation by fluorescence-activated nuclei sorting and 3′-end-seq
- (2012) Simon Haenni et al. NUCLEIC ACIDS RESEARCH
- ENCODE Data in the UCSC Genome Browser: year 5 update
- (2012) Kate R. Rosenbloom et al. NUCLEIC ACIDS RESEARCH
- Correlation Between DNase I Hypersensitive Site Distribution and Gene Expression in HeLa S3 Cells
- (2012) Ya-Mei Wang et al. PLoS One
- EGF signalling activates the ubiquitin proteasome system to modulate C. elegans lifespan
- (2011) Gang Liu et al. EMBO JOURNAL
- High-resolution mapping of open chromatin in the rice genome
- (2011) W. Zhang et al. GENOME RESEARCH
- Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions
- (2011) Gabriel E. Zentner et al. GENOME RESEARCH
- modMine: flexible access to modENCODE data
- (2011) S. Contrino et al. NUCLEIC ACIDS RESEARCH
- Dynamic reprogramming of chromatin accessibility during Drosophila embryo development
- (2011) Sean Thomas et al. GENOME BIOLOGY
- EOR-2 Is an Obligate Binding Partner of the BTB-Zinc Finger Protein EOR-1 in Caenorhabditis elegans
- (2010) GENETICS
- Broad chromosomal domains of histone modification patterns in C. elegans
- (2010) T. Liu et al. GENOME RESEARCH
- A unique chromatin signature uncovers early developmental enhancers in humans
- (2010) Alvaro Rada-Iglesias et al. NATURE
- Nucleosome dynamics define transcriptional enhancers
- (2010) Housheng Hansen He et al. NATURE GENETICS
- Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project
- (2010) M. B. Gerstein et al. SCIENCE
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists
- (2009) Eran Eden et al. BMC BIOINFORMATICS
- Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites
- (2009) Baochen Shi et al. BMC GENOMICS
- Caudal-like PAL-1 directly activates the bodywall muscle module regulator hlh-1 in C. elegans to initiate the embryonic muscle gene regulatory network
- (2009) H. Lei et al. DEVELOPMENT
- Massively parallel sequencing of the polyadenylated transcriptome of C. elegans
- (2009) L. W. Hillier et al. GENOME RESEARCH
- Genomic views of distant-acting enhancers
- (2009) Axel Visel et al. NATURE
- A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning
- (2008) A. Valouev et al. GENOME RESEARCH
- Combinatorial patterns of histone acetylations and methylations in the human genome
- (2008) Zhibin Wang et al. NATURE GENETICS
- Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters
- (2008) Leighton J. Core et al. SCIENCE
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started