Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium
出版年份 2017 全文链接
标题
Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium
作者
关键词
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出版物
Genome Biology and Evolution
Volume 9, Issue 12, Pages 3413-3431
出版商
Oxford University Press (OUP)
发表日期
2017-12-02
DOI
10.1093/gbe/evx255
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Coordinated Regulation of Species-Specific Hydroxycinnamic Acid Degradation and Siderophore Biosynthesis Pathways in Agrobacterium fabrum
- (2016) Jessica Baude et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Metabolic modelling reveals the specialization of secondary replicons for niche adaptation in Sinorhizobium meliloti
- (2016) George C. diCenzo et al. Nature Communications
- Horizontally transferred genes cluster spatially and metabolically
- (2015) Alexander Dilthey et al. Biology Direct
- Insights from 20 years of bacterial genome sequencing
- (2015) Miriam Land et al. FUNCTIONAL & INTEGRATIVE GENOMICS
- Epidemic Clones, Oceanic Gene Pools, and Eco-LD in the Free Living Marine Pathogen Vibrio parahaemolyticus
- (2015) Yujun Cui et al. MOLECULAR BIOLOGY AND EVOLUTION
- Ecological speciation in bacteria: reverse ecology approaches reveal the adaptive part of bacterial cladogenesis
- (2015) Florent Lassalle et al. RESEARCH IN MICROBIOLOGY
- Fine-scale diversity and extensive recombination in a quasisexual bacterial population occupying a broad niche
- (2015) M. J. Rosen et al. SCIENCE
- Revised phylogeny of Rhizobiaceae: Proposal of the delineation of Pararhizobium gen. nov., and 13 new species combinations
- (2015) Seyed Abdollah Mousavi et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Taxonomy of rhizobia and agrobacteria from the Rhizobiaceae family in light of genomics
- (2015) Ernesto Ormeño-Orrillo et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Bacterial genospecies that are not ecologically coherent: population genomics of Rhizobium leguminosarum
- (2015) N. Kumar et al. Open Biology
- Genomic Heterogeneity and Ecological Speciation within One Subspecies of Bacillus subtilis
- (2014) Sarah Kopac et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Analysis of Hydroxycinnamic Acid Degradation in Agrobacterium fabrum Reveals a Coenzyme A-Dependent, Beta-Oxidative Deacetylation Pathway
- (2014) Tony Campillo et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Single acquisition of protelomerase gave rise to speciation of a large and diverse clade within the Agrobacterium/Rhizobium supercluster characterized by the presence of a linear chromid
- (2014) Martha H. Ramírez-Bahena et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus
- (2014) N. Kashtan et al. SCIENCE
- TPMS: a set of utilities for querying collections of gene trees
- (2013) Thomas Bigot et al. BMC BIOINFORMATICS
- Is junk DNA bunk? A critique of ENCODE
- (2013) W. F. Doolittle PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Reconciliation of Sequence Data and Updated Annotation of the Genome of Agrobacterium tumefaciens C58, and Distribution of a Linear Chromosome in the Genus Agrobacterium
- (2012) Steven Slater et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Genome Sequence and Mutational Analysis of Plant-Growth-Promoting Bacterium Agrobacterium tumefaciens CCNWGS0286 Isolated from a Zinc-Lead Mine Tailing
- (2012) Xiuli Hao et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Quantifying Homologous Replacement of Loci between Haloarchaeal Species
- (2012) David Williams et al. Genome Biology and Evolution
- Genome Sequence of the Arsenite-Oxidizing Strain Agrobacterium tumefaciens 5A
- (2012) X. Hao et al. JOURNAL OF BACTERIOLOGY
- Progressive genome-wide introgression in agriculturalCampylobacter coli
- (2012) Samuel K. Sheppard et al. MOLECULAR ECOLOGY
- Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations
- (2012) G. J. Szollosi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Lateral gene transfer as a support for the tree of life
- (2012) S. S. Abby et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Population Genomics of the Facultatively Mutualistic Bacteria Sinorhizobium meliloti and S. medicae
- (2012) Brendan Epstein et al. PLoS Genetics
- Computational methods for Gene Orthology inference
- (2011) D. M. Kristensen et al. BRIEFINGS IN BIOINFORMATICS
- Models, algorithms and programs for phylogeny reconciliation
- (2011) J.-P. Doyon et al. BRIEFINGS IN BIOINFORMATICS
- Genomic Species Are Ecological Species as Revealed by Comparative Genomics in Agrobacterium tumefaciens
- (2011) Florent Lassalle et al. Genome Biology and Evolution
- Genome Sequence of the Curdlan-Producing Agrobacterium sp. Strain ATCC 31749
- (2011) A. M. Ruffing et al. JOURNAL OF BACTERIOLOGY
- Multilocus Sequence-Based Analysis Delineates a Clonal Population of Agrobacterium (Rhizobium) radiobacter (Agrobacterium tumefaciens) of Human Origin
- (2011) F. Aujoulat et al. JOURNAL OF BACTERIOLOGY
- Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid
- (2011) Daniel Wibberg et al. JOURNAL OF BIOTECHNOLOGY
- Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests
- (2010) Sophie S Abby et al. BMC BIOINFORMATICS
- Rapid and Efficient Identification of Agrobacterium Species by recA Allele Analysis
- (2010) Denis Costechareyre et al. MICROBIAL ECOLOGY
- Rapid evolutionary innovation during an Archaean genetic expansion
- (2010) Lawrence A. David et al. NATURE
- Introducing the bacterial ‘chromid’: not a chromosome, not a plasmid
- (2010) Peter W. Harrison et al. TRENDS IN MICROBIOLOGY
- The consequences of genetic drift for bacterial genome complexity
- (2009) C.-H. Kuo et al. GENOME RESEARCH
- Genome Sequences of Three Agrobacterium Biovars Help Elucidate the Evolution of Multichromosome Genomes in Bacteria
- (2009) S. C. Slater et al. JOURNAL OF BACTERIOLOGY
- Semantic Similarity in Biomedical Ontologies
- (2009) Catia Pesquita et al. PLoS Computational Biology
- Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths
- (2009) Marie Touchon et al. PLoS Genetics
- The Organization of the Bacterial Genome
- (2008) Eduardo P.C. Rocha Annual Review of Genetics
- The Origins of Ecological Diversity in Prokaryotes
- (2008) Frederick M. Cohan et al. CURRENT BIOLOGY
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