Metabolic modelling reveals the specialization of secondary replicons for niche adaptation in Sinorhizobium meliloti

Symbiosis within Symbiosis: Evolving Nitrogen-Fixing Legume Symbionts

(2016) Philippe Remigi et al.   TRENDS IN MICROBIOLOGY

Use of plant colonizing bacteria as chassis for transfer of N 2 -fixation to cereals

(2015) Barney A Geddes et al.   CURRENT OPINION IN BIOTECHNOLOGY

Proline auxotrophy in Sinorhizobium meliloti results in a plant-specific symbiotic phenotype

(2015) George C. diCenzo et al.   MICROBIOLOGY-SGM

Genetic redundancy is prevalent within the 6.7 Mb Sinorhizobium meliloti genome

(2015) George C. diCenzo et al.   MOLECULAR GENETICS AND GENOMICS

Effect of the plant flavonoid luteolin on Ensifer meliloti 3001 phenotypic responses

(2015) G. Spini et al.   PLANT AND SOIL

Arabinose and protocatechuate catabolism genes are important for growth of Rhizobium leguminosarum biovar viciae in the pea rhizosphere

(2015) Paula Garcia-Fraile et al.   PLANT AND SOIL

Evolution of Intra-specific Regulatory Networks in a Multipartite Bacterial Genome

(2015) Marco Galardini et al.   PLoS Computational Biology

Bacterial exopolysaccharides: biosynthesis pathways and engineering strategies

(2015) Jochen Schmid et al.   Frontiers in Microbiology

Physiology, genetics, and biochemistry of carbon metabolism in the alphaproteobacterium Sinorhizobium meliloti

(2014) Barney A. Geddes et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Genome-scale metabolic reconstruction and constraint-based modelling of the Antarctic bacteriumPseudoalteromonas haloplanktis TAC125

(2014) Marco Fondi et al.   ENVIRONMENTAL MICROBIOLOGY

An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser-capture microdissection coupled to RNA sequencing

(2014) Brice Roux et al.   PLANT JOURNAL

Bigger is not always better: Transmission and fitness burden of ∼1MB Pseudomonas syringae megaplasmid pMPPla107

(2014) Artur Romanchuk et al.   PLASMID

Examination of Prokaryotic Multipartite Genome Evolution through Experimental Genome Reduction

(2014) George C. diCenzo et al.   PLoS Genetics

Transport and Metabolism in Legume-Rhizobia Symbioses

(2013) Michael Udvardi et al.   Annual Review of Plant Biology

Directed Construction and Analysis of a Sinorhizobium meliloti pSymA Deletion Mutant Library

(2013) Svetlana N. Yurgel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Biotechnological solutions to the nitrogen problem

(2013) Giles ED Oldroyd et al.   CURRENT OPINION IN BIOTECHNOLOGY

Large Deletions in the pAtC58 Megaplasmid of Agrobacterium tumefaciens Can Confer Reduced Carriage Cost and Increased Expression of Virulence Genes

(2013) Elise R. Morton et al.   Genome Biology and Evolution

Replicon-Dependent Bacterial Genome Evolution: The Case of Sinorhizobium meliloti

(2013) Marco Galardini et al.   Genome Biology and Evolution

DuctApe: A suite for the analysis and correlation of genomic and OmniLog™ Phenotype Microarray data

(2013) Marco Galardini et al.   GENOMICS

Cell Growth Inhibition upon Deletion of Four Toxin-Antitoxin Loci from the Megaplasmids of Sinorhizobium meliloti

(2013) B. Milunovic et al.   JOURNAL OF BACTERIOLOGY

Comparative Metabolic Systems Analysis of Pathogenic Burkholderia

(2013) J. A. Bartell et al.   JOURNAL OF BACTERIOLOGY

Establishment, in silico analysis, and experimental verification of a large-scale metabolic network of the xanthan producing Xanthomonas campestris pv. campestris strain B100

(2013) Sarah Schatschneider et al.   JOURNAL OF BIOTECHNOLOGY

The tRNAargGene andengAAre Essential Genes on the 1.7-Mb pSymB Megaplasmid of Sinorhizobium meliloti and Were Translocated Together from the Chromosome in an Ancestral Strain

(2012) George diCenzo et al.   JOURNAL OF BACTERIOLOGY

Aggregation by depletion attraction in cultures of bacteria producing exopolysaccharide

(2012) G. Dorken et al.   Journal of the Royal Society Interface

In Silico Insights into the Symbiotic Nitrogen Fixation in Sinorhizobium meliloti via Metabolic Reconstruction

(2012) Hansheng Zhao et al.   PLoS One

Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti

(2011) Marco Galardini et al.   BMC GENOMICS

WebMGA: a customizable web server for fast metagenomic sequence analysis

(2011) Sitao Wu et al.   BMC GENOMICS

Systems biology of bacterial nitrogen fixation: High-throughput technology and its integrative description with constraint-based modeling

(2011) Osbaldo Resendis-Antonio et al.   BMC Systems Biology

iRsp1095: A genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network

(2011) Saheed Imam et al.   BMC Systems Biology

Plasmids with a Chromosome-Like Role in Rhizobia

(2011) C. Landeta et al.   JOURNAL OF BACTERIOLOGY

An ABC-Type Cobalt Transport System Is Essential for Growth of Sinorhizobium melilotiat Trace Metal Concentrations

(2011) J. Cheng et al.   JOURNAL OF BACTERIOLOGY

The LysR-type PcaQ protein regulates expression of a protocatechuate-inducible ABC-type transport system in Sinorhizobium meliloti

(2011) A. M. MacLean et al.   MICROBIOLOGY-SGM

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

(2011) Jan Schellenberger et al.   Nature Protocols

iPath2.0: interactive pathway explorer

(2011) Takuji Yamada et al.   NUCLEIC ACIDS RESEARCH

Adaptation of Rhizobium leguminosarum to pea, alfalfa and sugar beet rhizospheres investigated by comparative transcriptomics

(2011) Vinoy K Ramachandran et al.   GENOME BIOLOGY

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions

(2010) Jan Schellenberger et al.   BMC BIOINFORMATICS

Introducing the bacterial ‘chromid’: not a chromosome, not a plasmid

(2010) Peter W. Harrison et al.   TRENDS IN MICROBIOLOGY

Metabolic Capacity of Sinorhizobium (Ensifer) meliloti Strains as Determined by Phenotype MicroArray Analysis

(2009) E. G. Biondi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A shotgun lipidomics study of a putative lysophosphatidic acid acyl transferase (PlsC) in Sinorhizobium meliloti

(2009) Libia Saborido Basconcillo et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Pathogenomics of the Virulence Plasmids of Escherichia coli

(2009) T. J. Johnson et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Rhizosphere: biophysics, biogeochemistry and ecological relevance

(2009) Philippe Hinsinger et al.   PLANT AND SOIL

Sinorhizobium meliloti phospholipase C required for lipid remodeling during phosphorus limitation

(2009) M. Zavaleta-Pastor et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Organization of the Bacterial Genome

(2008) Eduardo P.C. Rocha   Annual Review of Genetics