Genomic Heterogeneity and Ecological Speciation within One Subspecies of Bacillus subtilis

Speedy speciation in a bacterial microcosm: new species can arise as frequently as adaptations within a species

(2013) Alexander F Koeppel et al.   ISME Journal

The quorum sensing diversity within and between ecotypes of Bacillus subtilis

(2012) Polonca Stefanic et al.   ENVIRONMENTAL MICROBIOLOGY

Replacing and Additive Horizontal Gene Transfer in Streptococcus

(2012) Sang Chul Choi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Population Genomics of Early Events in the Ecological Differentiation of Bacteria

(2012) B. J. Shapiro et al.   SCIENCE

A High-Resolution View of Genome-Wide Pneumococcal Transformation

(2012) Nicholas J. Croucher et al.   PLoS Pathogens

Fine-Scale Distribution Patterns of Synechococcus Ecological Diversity in Microbial Mats of Mushroom Spring, Yellowstone National Park

(2011) Eric D. Becraft et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotes

(2011) O. Popa et al.   GENOME RESEARCH

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

The genome sequence of Bacillus subtilis subsp. spizizenii W23: insights into speciation within the B. subtilis complex and into the history of B. subtilis genetics

(2011) D. R. Zeigler   MICROBIOLOGY-SGM

Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species

(2011) C. Luo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Influence of Molecular Resolution on Sequence-Based Discovery of Ecological Diversity amongSynechococcusPopulations in an Alkaline Siliceous Hot Spring Microbial Mat

(2010) Melanie C. Melendrez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ecology of Speciation in the Genus Bacillus

(2010) N. Connor et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions

(2010) Chad Laing et al.   BMC BIOINFORMATICS

Probing the pan-genome of Listeria monocytogenes: new insights into intraspecific niche expansion and genomic diversification

(2010) Xiangyu Deng et al.   BMC GENOMICS

The horizontal flow of the plasmid resistome: clues from inter-generic similarity networks

(2010) Marco Fondi et al.   ENVIRONMENTAL MICROBIOLOGY

Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities

(2010) V. J. Denef et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A phylum level perspective on bacterial cell envelope architecture

(2010) Iain C. Sutcliffe   TRENDS IN MICROBIOLOGY

A species concept for bacteria based on adaptive divergence

(2010) Michiel Vos   TRENDS IN MICROBIOLOGY

Generation of Genic Diversity among Streptococcus pneumoniae Strains via Horizontal Gene Transfer during a Chronic Polyclonal Pediatric Infection

(2010) N. Luisa Hiller et al.   PLoS Pathogens

Cryptic Lineages of the Genus Escherichia

(2009) S. T. Walk et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

On the origin of prokaryotic species

(2009) W. F. Doolittle et al.   GENOME RESEARCH

Functional Characterization of the Antibiotic Resistance Reservoir in the Human Microflora

(2009) M. O. A. Sommer et al.   SCIENCE

Evidence for Ecological Speciation and Its Alternative

(2009) D. Schluter   SCIENCE

Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths

(2009) Marie Touchon et al.   PLoS Genetics

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

The Origins of Ecological Diversity in Prokaryotes

(2008) Frederick M. Cohan et al.   CURRENT BIOLOGY

Taxonomic resolution, ecotypes and the biogeography ofProchlorococcus

(2008) Adam C. Martiny et al.   ENVIRONMENTAL MICROBIOLOGY

The Pangenome Structure of Escherichia coli: Comparative Genomic Analysis of E. coli Commensal and Pathogenic Isolates

(2008) D. A. Rasko et al.   JOURNAL OF BACTERIOLOGY

The temperature-adaptive fatty acid content in Bacillus simplex strains from 'Evolution Canyon', Israel

(2008) J. Sikorski et al.   MICROBIOLOGY-SGM

Microbial diversity and the genetic nature of microbial species

(2008) Mark Achtman et al.   NATURE REVIEWS MICROBIOLOGY

Identifying the fundamental units of bacterial diversity: A paradigm shift to incorporate ecology into bacterial systematics

(2008) A. Koeppel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Resource Partitioning and Sympatric Differentiation Among Closely Related Bacterioplankton

(2008) D. E. Hunt et al.   SCIENCE