Transient leaf endophytes are the most active fungi in 1-year-old beech leaf litter

Distinct sensitivity of fungal freshwater guilds to water quality

(2017) Oliver Röhl et al.   MYCOLOGICAL PROGRESS

Growing evidence for facultative biotrophy in saprotrophic fungi: data from microcosm tests with 201 species of wood-decay basidiomycetes

(2017) Gabriel R. Smith et al.   NEW PHYTOLOGIST

The Phyllosphere: Microbial Jungle at the Plant–Climate Interface

(2016) Corinne Vacher et al.   Annual Review of Ecology Evolution and Systematics

New evidence for broad trophic status of leaf endophytic fungi of Quercus gambelii

(2016) Ismaiel Szink et al.   Fungal Ecology

Structure of phyllosphere fungal communities in a tropical dipterocarp plantation: A massively parallel next-generation sequencing analysis

(2016) Ayako Izuno et al.   MYCOSCIENCE

Microbes Drive Evolution of Animals and Plants: the Hologenome Concept

(2016) Eugene Rosenberg et al.   mBio

Endophytic Fungi from Frankincense Tree Improves Host Growth and Produces Extracellular Enzymes and Indole Acetic Acid

(2016) Abdul Latif Khan et al.   PLoS One

Plant-associated fungal communities in the light of meta’omics

(2015) Derek Peršoh   FUNGAL DIVERSITY

The plant microbiome explored: implications for experimental botany

(2015) Gabriele Berg et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes

(2015) Pablo R. Hardoim et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Initial colonization, community assembly and ecosystem function: fungal colonist traits and litter biochemistry mediate decay rate

(2015) Lauren C. Cline et al.   MOLECULAR ECOLOGY

Evolving insights to understanding mycorrhizas

(2015) Ian A. Dickie et al.   NEW PHYTOLOGIST

Cross-biome comparison of microbial association networks

(2015) Karoline Faust et al.   Frontiers in Microbiology

In the forest vine Smilax rotundifolia, fungal epiphytes show site-wide spatial correlation, while endophytes show evidence of niche partitioning

(2014) Christopher B. Zambell et al.   FUNGAL DIVERSITY

The Role of Endophytic Fungal Individuals and Communities in the Decomposition of Pinus massoniana Needle Litter

(2014) Zhilin Yuan et al.   PLoS One

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Factors shaping community structure of endophytic fungi–evidence from the Pinus-Viscum-system

(2013) Derek Peršoh   FUNGAL DIVERSITY

Endophyte research: going beyond isolation and metabolite documentation

(2013) Trichur S. Suryanarayanan   Fungal Ecology

Below-ground fine-scale distribution and soil versus fine root detection of fungal and soil oomycete communities in a French beech forest

(2013) Aurore Coince et al.   Fungal Ecology

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Diagnostic assessment of mycodiversity in environmental samples by fungal ITS1 rDNA length polymorphism

(2013) Alfons R. Weig et al.   MYCOLOGICAL PROGRESS

Diversity of the Capnocheirides rhododendri-dominated fungal community in the phyllosphere of Rhododendron ferrugineum L.

(2013) Fabienne Flessa et al.   NOVA HEDWIGIA

Improving Griffith's protocol for co-extraction of microbial DNA and RNA in adsorptive soils

(2013) Mélanie M. Paulin et al.   SOIL BIOLOGY & BIOCHEMISTRY

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Endophytic mediation of reactive oxygen species and antioxidant activity in plants: a review

(2012) Cyd E. Hamilton et al.   FUNGAL DIVERSITY

Endophytes and associated marine derived fungi—ecological and chemical perspectives

(2012) Abdessamad Debbab et al.   FUNGAL DIVERSITY

Community structure and preference of endophytic fungi of three woody plants in a mixed forest

(2012) X. Sun et al.   Fungal Ecology

Don't make a mista(g)ke: is tag switching an overlooked source of error in amplicon pyrosequencing studies?

(2012) Tor Carlsen et al.   Fungal Ecology

Spatial variability of phyllosphere fungal assemblages: genetic distance predominates over geographic distance in a European beech stand (Fagus sylvatica)

(2012) Tristan Cordier et al.   Fungal Ecology

Fungal community on decomposing leaf litter undergoes rapid successional changes

(2012) Jana Voříšková et al.   ISME Journal

Spatio-temporal dynamics of endophyte diversity in the canopy of European ash (Fraxinus excelsior)

(2012) Almut Scholtysik et al.   MYCOLOGICAL PROGRESS

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

The composition of phyllosphere fungal assemblages of European beech (Fagus sylvatica ) varies significantly along an elevation gradient

(2012) Tristan Cordier et al.   NEW PHYTOLOGIST

Summer season and long-term drought increase the richness of bacteria and fungi in the foliar phyllosphere ofQuercus ilexin a mixed Mediterranean forest

(2012) J. Peñuelas et al.   PLANT BIOLOGY

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

Hidden Fungi, Emergent Properties: Endophytes and Microbiomes

(2011) Andrea Porras-Alfaro et al.   Annual Review of Phytopathology

Implementing large-scale and long-term functional biodiversity research: The Biodiversity Exploratories

(2010) Markus Fischer et al.   BASIC AND APPLIED ECOLOGY

First fungal community analyses of endophytic ascomycetes associated with Viscum album ssp. austriacum and its host Pinus sylvestris

(2010) Derek Peršoh et al.   Fungal Biology

Can leaf degrading enzymes provide evidence that endophytic fungi becoming saprobes?

(2010) Itthayakorn Promputtha et al.   FUNGAL DIVERSITY

Effects of fungal endophytes on grass and non-grass litter decomposition rates

(2010) Witoon Purahong et al.   FUNGAL DIVERSITY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Seasonally dynamic fungal communities in the Quercus macrocarpa phyllosphere differ between urban and nonurban environments

(2010) A. Jumpponen et al.   NEW PHYTOLOGIST

Effects of attack of saprobic fungi on twig litter decomposition by endophytic fungi

(2009) Yu Fukasawa et al.   ECOLOGICAL RESEARCH

Architecture of the wood-wide web: Rhizopogon spp. genets link multiple Douglas-fir cohorts

(2009) Kevin J. Beiler et al.   NEW PHYTOLOGIST

Fungal endophytes: diversity and functional roles

(2009) R. J. Rodriguez et al.   NEW PHYTOLOGIST

BioVenn – a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams

(2008) Tim Hulsen et al.   BMC GENOMICS

Towards a universally adaptable method for quantitative extraction of high-purity nucleic acids from soil

(2008) Derek Peršoh et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Endophytic and epiphytic phyllosphere fungi of Camellia japonica: seasonal and leaf age-dependent variations

(2008) Takashi Osono   MYCOLOGIA