Distinct sensitivity of fungal freshwater guilds to water quality

Aquatic fungi: targeting the forgotten in microbial ecology

(2016) Hans-Peter Grossart et al.   CURRENT OPINION IN MICROBIOLOGY

Dam-associated multiple-stressor impacts on fungal biomass and richness reveal the initial signs of ecosystem functioning impairment

(2016) Fanny Colas et al.   ECOLOGICAL INDICATORS

Functional response of lignicolous fungal guilds to bark beetle deforestation

(2016) Claus Bässler et al.   ECOLOGICAL INDICATORS

Multiple-stressor effects on stream invertebrates: a mesocosm experiment manipulating nutrients, fine sediment and flow velocity

(2016) Vasco Elbrecht et al.   FRESHWATER BIOLOGY

Beyond the water column: aquatic hyphomycetes outside their preferred habitat

(2016) Eric Chauvet et al.   Fungal Ecology

Biogeography of aquatic hyphomycetes: Current knowledge and future perspectives

(2016) Sofia Duarte et al.   Fungal Ecology

Aquatic hyphomycetes and litter decomposition in tropical – subtropical low order streams

(2016) Manuel A.S. Graça et al.   Fungal Ecology

Preliminary insights into the evolutionary relationships of aquatic hyphomycetes and endophytic fungi

(2016) Sahadevan Seena et al.   Fungal Ecology

Relationships between terrestrial and freshwater lignicolous fungi

(2016) R. Kodsueb et al.   Fungal Ecology

Aquatic fungal ecology

(2016) Felix Bärlocher   Fungal Ecology

Discovery of dark matter fungi in aquatic ecosystems demands a reappraisal of the phylogeny and ecology of zoosporic fungi

(2016) Hans-Peter Grossart et al.   Fungal Ecology

Lignicolous freshwater fungi along a north–south latitudinal gradient in the Asian/Australian region; can we predict the impact of global warming on biodiversity and function?

(2016) Kevin D. Hyde et al.   Fungal Ecology

Effects of whole-stream nitrogen enrichment and litter species mixing on litter decomposition and associated fungi

(2016) Verónica Ferreira et al.   LIMNOLOGICA

DNA-metabarcoding uncovers the diversity of soil-inhabiting fungi in the tropical island of Puerto Rico

(2016) Hector Urbina et al.   MYCOSCIENCE

Distributional patterns of freshwater ascomycetes communities along an Andes to Amazon elevational gradient in Peru

(2015) Carol A. Shearer et al.   BIODIVERSITY AND CONSERVATION

Error filtering, pair assembly and error correction for next-generation sequencing reads

(2015) Robert C. Edgar et al.   BIOINFORMATICS

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

(2015) Philip Francis Thomsen et al.   BIOLOGICAL CONSERVATION

Plant-associated fungal communities in the light of meta’omics

(2015) Derek Peršoh   FUNGAL DIVERSITY

Scraping the bottom of the barrel: are rare high throughput sequences artifacts?

(2015) Shawn P. Brown et al.   Fungal Ecology

Net effects of multiple stressors in freshwater ecosystems: a meta-analysis

(2015) Michelle C. Jackson et al.   GLOBAL CHANGE BIOLOGY

Climate warming and agricultural stressors interact to determine stream macroinvertebrate community dynamics

(2015) Jeremy J. Piggott et al.   GLOBAL CHANGE BIOLOGY

A conceptual model of litter breakdown in low order streams

(2015) Manuel A. S. Graça et al.   INTERNATIONAL REVIEW OF HYDROBIOLOGY

High-Throughput Sequencing Reveals Drastic Changes in Fungal Communities in the Phyllosphere of Norway Spruce (Picea abies) Following Invasion of the Spruce Bud Scale (Physokermes piceae)

(2015) Audrius Menkis et al.   MICROBIAL ECOLOGY

One fungus, which genes? Development and assessment of universal primers for potential secondary fungal DNA barcodes

(2015) J.B. Stielow et al.   PERSOONIA

Reconceptualizing synergism and antagonism among multiple stressors

(2015) Jeremy J. Piggott et al.   Ecology and Evolution

Network analysis reveals that bacteria and fungi form modules that correlate independently with soil parameters

(2014) Alexandre B. de Menezes et al.   ENVIRONMENTAL MICROBIOLOGY

Elevated temperature may intensify the positive effects of nutrients on microbial decomposition in streams

(2014) Isabel Fernandes et al.   FRESHWATER BIOLOGY

Stream-dwelling fungal decomposer communities along a gradient of eutrophication unraveled by 454 pyrosequencing

(2014) S. Duarte et al.   FUNGAL DIVERSITY

Climate warming and agricultural stressors interact to determine stream periphyton community composition

(2014) Jeremy J. Piggott et al.   GLOBAL CHANGE BIOLOGY

Diversity and Spatial Structure of Belowground Plant–Fungal Symbiosis in a Mixed Subtropical Forest of Ectomycorrhizal and Arbuscular Mycorrhizal Plants

(2014) Hirokazu Toju et al.   PLoS One

Endemism and functional convergence across the North American soil mycobiome

(2014) J. M. Talbot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Parasites in algae mass culture

(2014) Laura T. Carney et al.   Frontiers in Microbiology

Untangling the fungal niche: the trait-based approach

(2014) Thomas W. Crowther et al.   Frontiers in Microbiology

Freshwater Ascomycetes: Minutisphaera (Dothideomycetes) revisited, including one new species from Japan

(2013) Huzefa A. Raja et al.   MYCOLOGIA

Illumina metabarcoding of a soil fungal community

(2013) Philipp-André Schmidt et al.   SOIL BIOLOGY & BIOCHEMISTRY

Ultrafast clustering algorithms for metagenomic sequence analysis

(2012) W. Li et al.   BRIEFINGS IN BIOINFORMATICS

Estimation of fungal biomass in forest litter and soil

(2012) Petr Baldrian et al.   Fungal Ecology

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

The Fungi: 1, 2, 3 … 5.1 million species?

(2011) Meredith Blackwell   AMERICAN JOURNAL OF BOTANY

Venom gland transcriptomes of two elapid snakes (Bungarus multicinctus and Naja atra) and evolution of toxin genes

(2011) Yu Jiang et al.   BMC GENOMICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Light, nutrients and grazing interact to determine stream diatom community composition and functional group structure

(2010) KATHARINA LANGE et al.   FRESHWATER BIOLOGY

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

(2010) ANTHONY S. AMEND et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Labile soil carbon inputs mediate the soil microbial community composition and plant residue decomposition rates

(2010) Marie-Anne de Graaff et al.   NEW PHYTOLOGIST

Diversity meets decomposition

(2010) Mark O. Gessner et al.   TRENDS IN ECOLOGY & EVOLUTION

Basin characteristics and nutrient losses: the EUROHARP catchment network perspective

(2009) F. Bouraoui et al.   JOURNAL OF ENVIRONMENTAL MONITORING

BioVenn – a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams

(2008) Tim Hulsen et al.   BMC GENOMICS

Diversity and activity of aquatic fungi under low oxygen conditions

(2008) A. O. MEDEIROS et al.   FRESHWATER BIOLOGY

Leaf surface roughness influences colonization success of aquatic hyphomycete conidia

(2008) Sheamus G. Kearns et al.   Fungal Ecology

Towards a universally adaptable method for quantitative extraction of high-purity nucleic acids from soil

(2008) Derek Peršoh et al.   JOURNAL OF MICROBIOLOGICAL METHODS

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH

Effect of nutrients on the sporulation and diversity of aquatic hyphomycetes on submerged substrata in a Mediterranean stream

(2007) J. Artigas et al.   AQUATIC BOTANY

Aquatic hyphomycete communities as potential bioindicators for assessing anthropogenic stress

(2007) M. Solé et al.   SCIENCE OF THE TOTAL ENVIRONMENT