Differences in stability of seed-associated microbial assemblages in response to invasion by phytopathogenic microorganisms

Microbiota and Host Nutrition across Plant and Animal Kingdoms

(2015) Stéphane Hacquard et al.   Cell Host & Microbe

Resource pulses can alleviate the biodiversity–invasion relationship in soil microbial communities

(2015) Cyrus A. Mallon et al.   ECOLOGY

Terroir is a key driver of seed-associated microbial assemblages

(2015) Stephanie Klaedtke et al.   ENVIRONMENTAL MICROBIOLOGY

Identification of a molecular dialogue between developing seeds of Medicago truncatula and seedborne xanthomonads

(2015) Emmanuel Terrasson et al.   JOURNAL OF EXPERIMENTAL BOTANY

Acquisition and loss of desiccation tolerance in seeds: from experimental model to biological relevance

(2015) Bas J. W. Dekkers et al.   PLANTA

Microbial Invasions: The Process, Patterns, and Mechanisms

(2015) Cyrus Alexander Mallon et al.   TRENDS IN MICROBIOLOGY

Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health

(2015) Zhong Wei et al.   Nature Communications

qgraph: Network Visualizations of Relationships in Psychometric Data

(2015) Sacha Epskamp et al.   Journal of Statistical Software

A potential role for endogenous microflora in dormancy release, cytokinin metabolism and the response to fluridone in Lolium rigidum seeds

(2014) Danica E. Goggin et al.   ANNALS OF BOTANY

Emergence Shapes the Structure of the Seed Microbiota

(2014) Matthieu Barret et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The microbial ecology of flowers: an emerging frontier in phyllosphere research

(2014) Kristin Aleklett et al.   Botany

Simultaneous profiling of seed-associated bacteria and fungi reveals antagonistic interactions between microorganisms within a shared epiphytic microbiome onTriticumandBrassicaseeds

(2014) Matthew G. Links et al.   NEW PHYTOLOGIST

Interactions of Seedborne Bacterial Pathogens with Host and Non-Host Plants in Relation to Seed Infestation and Seedling Transmission

(2014) Bhabesh Dutta et al.   PLoS One

Ecological Succession and Stochastic Variation in the Assembly of Arabidopsis thaliana Phyllosphere Communities

(2014) L. Maignien et al.   mBio

Conditionally Rare Taxa Disproportionately Contribute to Temporal Changes in Microbial Diversity

(2014) A. Shade et al.   mBio

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Shifting the paradigm from pathogens to pathobiome: new concepts in the light of meta-omics

(2014) Muriel Vayssier-Taussat et al.   Frontiers in Cellular and Infection Microbiology

Tomato Fruit and Seed Colonization by Clavibacter michiganensis subsp. michiganensis through External and Internal Routes

(2013) Matthew A. Tancos et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity of the spinach (Spinacia oleracea) spermosphere and phyllosphere bacterial communities

(2013) Gabriela Lopez-Velasco et al.   FEMS MICROBIOLOGY LETTERS

The root microbiota—a fingerprint in the soil?

(2013) Aleklett Kristin et al.   PLANT AND SOIL

Dehydrin-like Proteins in the Necrotrophic Fungus Alternaria brassicicola Have a Role in Plant Pathogenesis and Stress Response

(2013) Stéphanie Pochon et al.   PLoS One

Alternaria redefined

(2013) J.H.C. Woudenberg et al.   STUDIES IN MYCOLOGY

Unexpected Diversity during Community Succession in the Apple Flower Microbiome

(2013) A. Shade et al.   mBio

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

(2013) Johan Bengtsson-Palme et al.   Methods in Ecology and Evolution

Flower infection of Brassica oleracea with Xanthomonas campestris pv. campestris results in high levels of seed infection

(2012) J. M. van der Wolf et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Microbial life in the phyllosphere

(2012) Julia A. Vorholt   NATURE REVIEWS MICROBIOLOGY

Location of Acidovorax citrulli in Infested Watermelon Seeds Is Influenced by the Pathway of Bacterial Invasion

(2012) B. Dutta et al.   PHYTOPATHOLOGY

The Arabidopsis thaliana-Alternaria brassicicola pathosystem: A model interaction for investigating seed transmission of necrotrophic fungi

(2012) Stephanie Pochon et al.   Plant Methods

Microbial diversity determines the invasion of soil by a bacterial pathogen

(2012) J. D. van Elsas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

Fundamentals of Microbial Community Resistance and Resilience

(2012) Ashley Shade et al.   Frontiers in Microbiology

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Intraspecific genotypic richness and relatedness predict the invasibility of microbial communities

(2011) Alexandre Jousset et al.   ISME Journal

Bacterial Communities Associated with Chenopodium album and Stellaria media Seeds from Arable Soils

(2011) Leonard S. van Overbeek et al.   MICROBIAL ECOLOGY

IMG: the integrated microbial genomes database and comparative analysis system

(2011) V. M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

Conservation and Diversity of Seed Associated Endophytes in Zea across Boundaries of Evolution, Ethnography and Ecology

(2011) David Johnston-Monje et al.   PLoS One

Bacterial community assembly based on functional genes rather than species

(2011) C. Burke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Transmission of Plant-Pathogenic Bacteria by Nonhost Seeds without Induction of an Associated Defense Reaction at Emergence

(2010) A. Darrasse et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Colonization of Cauliflower Blossom (Brassica oleracea) by Xanthomonas campestris pv. campestris, via Flies (Calliphora vomitoria) Can Result in Seed Infestation

(2010) Jan M Van Der Wolf et al.   JOURNAL OF PHYTOPATHOLOGY

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Adhesion and Fitness in the Bean Phyllosphere and Transmission to Seed ofXanthomonas fuscanssubsp.fuscans

(2009) A. Darsonval et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The Type III Secretion System of Xanthomonas fuscans subsp. fuscans Is Involved in the Phyllosphere Colonization Process and in Transmission to Seeds of Susceptible Beans

(2008) A. Darsonval et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

Effect of null mutations in theAbNIK1gene on saprophytic and parasitic fitness ofAlternaria brassicicolaisolates highly resistant to dicarboximide fungicides

(2008) B. Iacomi-Vasilescu et al.   PLANT PATHOLOGY