Development of a cost-effective metabarcoding strategy for analysis of the marine phytoplankton community

Evaluation of bacterial communities by bacteriome analysis targeting 16S rRNA genes and quantitative analysis of ammonia monooxygenase gene in different types of compost

(2016) Rika Kitamura et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Studying long 16S rDNA sequences with ultrafast-metagenomic sequence classification using exact alignments (Kraken)

(2016) Fabiola Valenzuela-González et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Detection, Identification, and Significance of Phytoplasmas in Wild Grasses in East Africa

(2016) George O. Asudi et al.   PLANT DISEASE

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

(2015) Ramon Massana et al.   ENVIRONMENTAL MICROBIOLOGY

Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding

(2015) Noan Le Bescot et al.   ENVIRONMENTAL MICROBIOLOGY

PhytoREF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy

(2015) Johan Decelle et al.   Molecular Ecology Resources

Potential applications of next generation DNA sequencing of 16S rRNA gene amplicons in microbial water quality monitoring

(2015) J. Vierheilig et al.   WATER SCIENCE AND TECHNOLOGY

Standard filtration practices may significantly distort planktonic microbial diversity estimates

(2015) Cory C. Padilla et al.   Frontiers in Microbiology

Influence of DNA Extraction Method, 16S rRNA Targeted Hypervariable Regions, and Sample Origin on Microbial Diversity Detected by 454 Pyrosequencing in Marine Chemosynthetic Ecosystems

(2014) Perrine Cruaud et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities

(2013) Migun Shakya et al.   ENVIRONMENTAL MICROBIOLOGY

Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities

(2013) Ramiro Logares et al.   ENVIRONMENTAL MICROBIOLOGY

A global perspective on marine photosynthetic picoeukaryote community structure

(2013) Amy R Kirkham et al.   ISME Journal

Application of Illumina next-generation sequencing to characterize the bacterial community of the Upper Mississippi River

(2013) C. Staley et al.   JOURNAL OF APPLIED MICROBIOLOGY

Illumina Sequencing of 16S rRNA Tag Revealed Spatial Variations of Bacterial Communities in a Mangrove Wetland

(2013) Xiao-Tao Jiang et al.   MICROBIAL ECOLOGY

Unveiling Distribution Patterns of Freshwater Phytoplankton by a Next Generation Sequencing Based Approach

(2013) Alexander Eiler et al.   PLoS One

Illumina metabarcoding of a soil fungal community

(2013) Philipp-André Schmidt et al.   SOIL BIOLOGY & BIOCHEMISTRY

Pyrosequencing of plastid 23S rRNA genes reveals diverse and dynamic cyanobacterial and algal populations in two eutrophic lakes

(2012) Blaire Steven et al.   FEMS MICROBIOLOGY ECOLOGY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample

(2012) Chengwei Luo et al.   PLoS One

PCR Biases Distort Bacterial and Archaeal Community Structure in Pyrosequencing Datasets

(2012) Ameet J. Pinto et al.   PLoS One

Illumina-based analysis of microbial community diversity

(2011) Patrick H Degnan et al.   ISME Journal

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

Diversity of active marine picoeukaryotes in the Eastern Mediterranean Sea unveiled using photosystem-II psbA transcripts

(2010) Dikla Man-Aharonovich et al.   ISME Journal

FIRST HARMFUL DINOPHYSIS (DINOPHYCEAE, DINOPHYSIALES) BLOOM IN THE U.S. IS REVEALED BY AUTOMATED IMAGING FLOW CYTOMETRY1

(2010) Lisa Campbell et al.   JOURNAL OF PHYCOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Validation of Testing and Interpretation Protocols for Low Template DNA Samples Using AmpFℓSTR® Identifiler®

(2009) Theresa Caragine et al.   CROATIAN MEDICAL JOURNAL

Increasing importance of small phytoplankton in a warmer ocean

(2009) XOSÉ ANXELU G. MORÁN et al.   GLOBAL CHANGE BIOLOGY

Next-Generation DNA Sequencing Methods

(2008) Elaine R. Mardis   Annual Review of Genomics and Human Genetics