Chitin Mixed in Potting Soil Alters Lettuce Growth, the Survival of Zoonotic Bacteria on the Leaves and Associated Rhizosphere Microbiology

Enhancement of soil suppressiveness against Rhizoctonia solani in sugar beet by organic amendments

(2015) Joeke Postma et al.   APPLIED SOIL ECOLOGY

Impact of a woody biochar on properties of a sandy loam soil and spring barley during a two-year field experiment

(2015) Victoria Nelissen et al.   EUROPEAN JOURNAL OF AGRONOMY

Application ofBacillus subtilisto the Roots of Leafy Greens, in the Presence ofListeria innocuaandSalmonellaNewport, Induces Closure of Stomata

(2015) Sarah M. Markland et al.   Foodborne Pathogens and Disease

Biopreservative methods to control the growth of foodborne pathogens on fresh-cut lettuce

(2015) M. Oliveira et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Biotic Stress Shifted Structure and Abundance of Enterobacteriaceae in the Lettuce Microbiome

(2015) Armin Erlacher et al.   PLoS One

An extracellular antifungal chitinase from Lecanicillium lecanii: purification,properties, and application in biocontrol against plant pathogenic fungi

(2015) Huu Quan NGUYEN et al.   TURKISH JOURNAL OF BIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Effects of chitin-rich residues on growth and postharvest quality of lettuce

(2014) P. Muymas et al.   BIOLOGICAL AGRICULTURE & HORTICULTURE

Non-pathogenic rhizosphere bacteria belonging to the generaRhizorhapisandSphingobiumprovide specific control of lettuce corky root disease caused by species of the same bacterial genera

(2014) A. H. C. van Bruggen et al.   PLANT PATHOLOGY

Underlying Mechanism of Antimicrobial Activity of Chitosan Microparticles and Implications for the Treatment of Infectious Diseases

(2014) Soo Jin Jeon et al.   PLoS One

Strengths and Limitations of 16S rRNA Gene Amplicon Sequencing in Revealing Temporal Microbial Community Dynamics

(2014) Rachel Poretsky et al.   PLoS One

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Bacterial communities in chitin-amended soil as revealed by 16S rRNA gene based pyrosequencing

(2014) Mariana Silvia Cretoiu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Phyllosphere Microbiota Composition and Microbial Community Transplantation on Lettuce Plants Grown Indoors

(2014) T. R. Williams et al.   mBio

Enteric Pathogen Survival Varies Substantially in Irrigation Water from Belgian Lettuce Producers

(2014) Inge Van Der Linden et al.   International Journal of Environmental Research and Public Health

Agricultural and Management Practices and Bacterial Contamination in Greenhouse versus Open Field Lettuce Production

(2014) Kevin Holvoet et al.   International Journal of Environmental Research and Public Health

Plant innate immunity against human bacterial pathogens

(2014) Maeli Melotto et al.   Frontiers in Microbiology

Chitin Amendment Increases Soil Suppressiveness toward Plant Pathogens and Modulates the Actinobacterial and Oxalobacteraceal Communities in an Experimental Agricultural Field

(2013) Mariana Silvia Cretoiu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Survival of Enteric Pathogens During Butterhead Lettuce Growth: Crop Stage, Leaf Age, and Irrigation

(2013) Inge Van der Linden et al.   Foodborne Pathogens and Disease

Cellvibrio diazotrophicus sp. nov., a nitrogen-fixing bacteria isolated from the rhizosphere of salt meadow plants and emended description of the genus Cellvibrio

(2013) C. Suarez et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Taibaiella smilacinae gen. nov., sp. nov., an endophytic member of the family Chitinophagaceae isolated from the stem of Smilacina japonica, and emended description of Flavihumibacter petaseus

(2013) L. Zhang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Plant Defense Stimulation by Natural Isolates of Bacillus Depends on Efficient Surfactin Production

(2013) Hélène Cawoy et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

A comprehensive molecular phylogeny of the Mortierellales (Mortierellomycotina) based on nuclear ribosomal DNA

(2013) L. Wagner et al.   PERSOONIA

Organically Managed Soils Reduce Internal Colonization of Tomato Plants bySalmonella entericaSerovar Typhimurium

(2013) Ganyu Gu et al.   PHYTOPATHOLOGY

Season, Irrigation, Leaf Age, and Escherichia coli Inoculation Influence the Bacterial Diversity in the Lettuce Phyllosphere

(2013) Thomas R. Williams et al.   PLoS One

Soil Bacterial Community Shifts after Chitin Enrichment: An Integrative Metagenomic Approach

(2013) Samuel Jacquiod et al.   PLoS One

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Compost: Its role, mechanism and impact on reducing soil-borne plant diseases

(2013) C.M. Mehta et al.   WASTE MANAGEMENT

Functional genes to assess nitrogen cycling and aromatic hydrocarbon degradation: primers and processing matter

(2013) C. Ryan Penton et al.   Frontiers in Microbiology

A Review of the Applications of Chitin and Its Derivatives in Agriculture to Modify Plant-Microbial Interactions and Improve Crop Yields

(2013) Russell Sharp   Agronomy-Basel

Interrelationships of Food Safety and Plant Pathology: The Life Cycle of Human Pathogens on Plants

(2012) Jeri D. Barak et al.   Annual Review of Phytopathology

Characterization and Identification of Productivity-Associated Rhizobacteria in Wheat

(2012) Michael Anderson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Presence and survival of Escherichia coli O157:H7 on lettuce leaves and in soil treated with contaminated compost and irrigation water

(2012) M. Oliveira et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

(2012) Daniel McDonald et al.   GigaScience

Impact of Biochar Application to Soil on the Root-Associated Bacterial Community Structure of Fully Developed Greenhouse Pepper Plants

(2011) Max Kolton et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Extraction, characterization, and nematicidal activity of chitin and chitosan derived from shrimp shell wastes

(2011) Mohamed A. Radwan et al.   BIOLOGY AND FERTILITY OF SOILS

Identifying biologically relevant differences between metagenomic communities

(2010) Donovan H. Parks et al.   BIOINFORMATICS

Isolation and characterization of antagonistic fungi against potato scab pathogens from potato field soils

(2010) Masahiro Tagawa et al.   FEMS MICROBIOLOGY LETTERS

Chitosan in Plant Protection

(2010) Abdelbasset El Hadrami et al.   Marine Drugs

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conserved Fungal LysM Effector Ecp6 Prevents Chitin-Triggered Immunity in Plants

(2010) R. de Jonge et al.   SCIENCE

Use and misuse of PLFA measurements in soils

(2010) Åsa Frostegård et al.   SOIL BIOLOGY & BIOCHEMISTRY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Chitinase genes revealed and compared in bacterial isolates, DNA extracts and a metagenomic library from a phytopathogen-suppressive soil

(2009) Karin Hjort et al.   FEMS MICROBIOLOGY ECOLOGY

Diversity of soil and rhizosphere fungi under Araucaria bidwillii (Bunya pine) at an Australian tropical montane rainforest site

(2009) N. J. A. Curlevski et al.   FUNGAL DIVERSITY

Leaf Age as a Risk Factor in Contamination of Lettuce with Escherichia coli O157:H7 and Salmonella enterica

(2008) M. T. Brandl et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A Large Escherichia coli O157 Outbreak in Sweden Associated with Locally Produced Lettuce

(2008) A. Söderström et al.   Foodborne Pathogens and Disease

Outbreak of Salmonella Thompson Infections Linked to Imported Rucola Lettuce

(2008) Karin Nygård et al.   Foodborne Pathogens and Disease

Potential of Lecanicillium spp. for management of insects, nematodes and plant diseases

(2008) Mark S. Goettel et al.   JOURNAL OF INVERTEBRATE PATHOLOGY