Season, Irrigation, Leaf Age, and Escherichia coli Inoculation Influence the Bacterial Diversity in the Lettuce Phyllosphere

Persistence of Escherichia coli on Injured Iceberg Lettuce in the Field, Overhead Irrigated with Contaminated Water

(2016) FIONA BARKER-REID et al.   JOURNAL OF FOOD PROTECTION

Seasonal variability in airborne bacterial communities at a high-elevation site

(2012) Robert M. Bowers et al.   ATMOSPHERIC ENVIRONMENT

Leaf microbiota in an agroecosystem: spatiotemporal variation in bacterial community composition on field-grown lettuce

(2012) Gurdeep Rastogi et al.   ISME Journal

Modeling microbial communities: Current, developing, and future technologies for predicting microbial community interaction

(2012) Peter Larsen et al.   JOURNAL OF BIOTECHNOLOGY

Deep Sequencing Analyses of Low Density Microbial Communities: Working at the Boundary of Accurate Microbiota Detection

(2012) Giske Biesbroek et al.   PLoS One

Phyllosphere bacterial communities of trichome-bearing and trichomeless Arabidopsis thaliana leaves

(2011) Eva E. Reisberg et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Geographical Location Determines the Population Structure in Phyllosphere Microbial Communities of a Salt-Excreting Desert Tree

(2011) Omri M. Finkel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial community diversity and variation in spray water sources and the tomato fruit surface

(2011) Adriana Telias et al.   BMC MICROBIOLOGY

Fate of Escherichia coli O157:H7 in field-inoculated lettuce

(2011) Anne-laure Moyne et al.   FOOD MICROBIOLOGY

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Characterization of interactions between Escherichia coli O157:H7 with epiphytic bacteria in vitro and on spinach leaf surfaces

(2011) Gabriela Lopez-Velasco et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

(2011) Claudia Knief et al.   ISME Journal

Survival and colonization of Escherichia coli O157:H7 on spinach leaves as affected by inoculum level and carrier, temperature and relative humidity

(2011) S. Choi et al.   JOURNAL OF APPLIED MICROBIOLOGY

Changes in spinach phylloepiphytic bacteria communities following minimal processing and refrigerated storage described using pyrosequencing of 16S rRNA amplicons

(2011) G. Lopez-Velasco et al.   JOURNAL OF APPLIED MICROBIOLOGY

German Outbreak ofEscherichia coliO104:H4 Associated with Sprouts

(2011) Udo Buchholz et al.   NEW ENGLAND JOURNAL OF MEDICINE

The Carnivorous Pale Pitcher Plant Harbors Diverse, Distinct, and Time-Dependent Bacterial Communities

(2010) M. M. Koopman et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Both Leaf Properties and Microbe-Microbe Interactions Influence Within-Species Variation in Bacterial Population Diversity and Structure in the Lettuce (Lactuca Species) Phyllosphere

(2010) P. J. Hunter et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags

(2010) Gary D Wu et al.   BMC MICROBIOLOGY

The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves

(2010) Amanda J. Redford et al.   ENVIRONMENTAL MICROBIOLOGY

Alterations of the phylloepiphytic bacterial community associated with interactions of Escherichia coli O157:H7 during storage of packaged spinach at refrigeration temperatures

(2010) Gabriela Lopez-Velasco et al.   FOOD MICROBIOLOGY

Site and plant species are important determinants of the Methylobacterium community composition in the plant phyllosphere

(2010) Claudia Knief et al.   ISME Journal

A PCR-based toolbox for the culture-independent quantification of total bacterial abundances in plant environments

(2010) Gurdeep Rastogi et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Annual and Seasonal Variation in the Phyllosphere Bacterial Community Associated with Leaves of the Southern Magnolia (Magnolia grandiflora)

(2010) Colin R. Jackson et al.   MICROBIAL ECOLOGY

The Effects from DNA Extraction Methods on the Evaluation of Microbial Diversity Associated with Human Colonic Tissue

(2010) Páraic Ó Cuív et al.   MICROBIAL ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

Persistence ofEscherichia coliO157:H7 on the rhizosphere and phyllosphere of lettuce

(2009) A. Mark Ibekwe et al.   LETTERS IN APPLIED MICROBIOLOGY

Linking Microbial Community Structure and Function to Seasonal Differences in Soil Moisture and Temperature in a Chihuahuan Desert Grassland

(2009) Colin W. Bell et al.   MICROBIAL ECOLOGY

Bacterial Succession on the Leaf Surface: A Novel System for Studying Successional Dynamics

(2009) Amanda J. Redford et al.   MICROBIAL ECOLOGY

Community proteogenomics reveals insights into the physiology of phyllosphere bacteria

(2009) N. Delmotte et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assessing the impact of the biological control agentBacillus thuringiensison the indigenous microbial community within the pepper plant phyllosphere

(2008) Baoguo Zhang et al.   FEMS MICROBIOLOGY LETTERS

Summer meeting 2007 the problems with fresh produce: an overview

(2008) M.P. Doyle et al.   JOURNAL OF APPLIED MICROBIOLOGY

Phyllosphere microbiology with special reference to diversity and plant genotype

(2008) J.M. Whipps et al.   JOURNAL OF APPLIED MICROBIOLOGY

DGGE and real-time PCR analysis of lactic acid bacteria in bacterial communities of the phyllosphere of lettuce

(2008) Jutta Zwielehner et al.   MOLECULAR NUTRITION & FOOD RESEARCH

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing

(2008) Anders F. Andersson et al.   PLoS One

Microbial contamination of fruit and vegetables and the behaviour of enteropathogens in the phyllosphere: a review

(2007) J.C. Heaton et al.   JOURNAL OF APPLIED MICROBIOLOGY