Diversity of Phototrophic Genes Suggests Multiple Bacteria May Be Able to Exploit Sunlight in Exposed Soils from the Sør Rondane Mountains, East Antarctica

Reconstructing the Origin of Oxygenic Photosynthesis: Do Assembly and Photoactivation Recapitulate Evolution?

(2016) Tanai Cardona   Frontiers in Plant Science

Assessing Bacterial Diversity in the Rhizosphere of Thymus zygis Growing in the Sierra Nevada National Park (Spain) through Culture-Dependent and Independent Approaches

(2016) Javier Pascual et al.   PLoS One

Analysis of cbbL, nifH, and pufLM in Soils from the Sør Rondane Mountains, Antarctica, Reveals a Large Diversity of Autotrophic and Phototrophic Bacteria

(2015) Guillaume Tahon et al.   MICROBIAL ECOLOGY

The MG-RAST metagenomics database and portal in 2015

(2015) Andreas Wilke et al.   NUCLEIC ACIDS RESEARCH

Proterozoic photosynthesis - a critical review

(2015) Nicholas J. Butterfield   PALAEONTOLOGY

MicRhoDE: a curated database for the analysis of microbial rhodopsin diversity and evolution

(2015) Dominique Boeuf et al.   Database-The Journal of Biological Databases and Curation

Patterns of Rare and Abundant Marine Microbial Eukaryotes

(2014) Ramiro Logares et al.   CURRENT BIOLOGY

Bacterial Diversity Assessment in Antarctic Terrestrial and Aquatic Microbial Mats: A Comparison between Bidirectional Pyrosequencing and Cultivation

(2014) Bjorn Tytgat et al.   PLoS One

Functional type 2 photosynthetic reaction centers found in the rare bacterial phylum Gemmatimonadetes

(2014) Y. Zeng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nature's toolkit for microbial rhodopsin ion pumps

(2014) O. Beja et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

pH is a good predictor of the distribution of anoxygenic purple phototrophic bacteria in Arctic soils

(2014) Youzhi Feng et al.   SOIL BIOLOGY & BIOCHEMISTRY

Reproducibility of pyrosequencing data for biodiversity assessment in complex communities

(2014) Aibin Zhan et al.   Methods in Ecology and Evolution

Dark-operative protochlorophyllide oxidoreductase generates substrate radicals by an iron-sulphur cluster in bacteriochlorophyll biosynthesis

(2014) Jiro Nomata et al.   Scientific Reports

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Microbial ecology and biogeochemistry of continental Antarctic soils

(2014) Don A. Cowan et al.   Frontiers in Microbiology

Structure-based characterization and antifreeze properties of a hyperactive ice-binding protein from the Antarctic bacteriumFlavobacterium frigorisPS1

(2014) Hackwon Do et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Distribution of acI-Actinorhodopsin genes in Baltic Sea salinity gradients indicates adaptation of facultative freshwater photoheterotrophs to brackish waters

(2013) Ivette Salka et al.   ENVIRONMENTAL MICROBIOLOGY

Marked seasonality of aerobic anoxygenic phototrophic bacteria in the coastal NW Mediterranean Sea as revealed by cell abundance, pigment concentration and pyrosequencing ofpufMgene

(2013) Isabel Ferrera et al.   ENVIRONMENTAL MICROBIOLOGY

Metagenomic insights into strategies of carbon conservation and unusual sulfur biogeochemistry in a hypersaline Antarctic lake

(2013) Sheree Yau et al.   ISME Journal

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

IMG/M 4 version of the integrated metagenome comparative analysis system

(2013) Victor M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

Insights into Variability of Actinorhodopsin Genes of the LG1 Cluster in Two Different Freshwater Habitats

(2013) Jitka Jezberová et al.   PLoS One

Geologic evolution of the Sør Rondane Mountains, East Antarctica: Collision tectonics proposed based on metamorphic processes and magnetic anomalies

(2013) Yasuhito Osanai et al.   PRECAMBRIAN RESEARCH

High sensitivity of 454 pyrosequencing for detection of rare species in aquatic communities

(2013) Aibin Zhan et al.   Methods in Ecology and Evolution

Abundance and Genetic Diversity of Aerobic Anoxygenic Phototrophic Bacteria of Coastal Regions of the Pacific Ocean

(2012) Anna E. Ritchie et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

A metaproteomic assessment of winter and summer bacterioplankton from Antarctic Peninsula coastal surface waters

(2012) Timothy J Williams et al.   ISME Journal

Genome Sequence of Proteorhodopsin-Containing Sea Ice Bacterium Glaciecola punicea ACAM 611T

(2012) Q.-L. Qin et al.   JOURNAL OF BACTERIOLOGY

Origin and Spread of Photosynthesis Based upon Conserved Sequence Features in Key Bacteriochlorophyll Biosynthesis Proteins

(2012) Radhey S. Gupta   MOLECULAR BIOLOGY AND EVOLUTION

Environmental actinorhodopsin expression revealed by a newin situfiltration and fixation sampler

(2012) Christian Wurzbacher et al.   Environmental Microbiology Reports

The Rare Bacterial Biosphere

(2011) Carlos Pedrós-Alió   Annual Review of Marine Science

Evolution of Photosynthesis

(2011) Martin F. Hohmann-Marriott et al.   Annual Review of Plant Biology

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Soil purple phototrophic bacterial diversity under double cropping (rice-wheat) with free-air CO2 enrichment (FACE)

(2011) Y. Feng et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Skermanella stibiiresistens sp. nov., a highly antimony-resistant bacterium isolated from coal-mining soil, and emended description of the genus Skermanella

(2011) G. Luo et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The use of denaturing gradient gel electrophoresis with fully degenerate pufM primers to monitor aerobic anoxygenic phototrophic assemblages

(2011) Natalya Yutin et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Elevated Ground-Level O3 Changes the Diversity of Anoxygenic Purple Phototrophic Bacteria in Paddy Field

(2011) Youzhi Feng et al.   MICROBIAL ECOLOGY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

High consistency between replicate 454 pyrosequencing analyses of ectomycorrhizal plant root samples

(2011) Håvard Kauserud et al.   MYCORRHIZA

IMG: the integrated microbial genomes database and comparative analysis system

(2011) V. M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

Aerobic anoxygenic phototrophic bacteria in Antarctic sea ice and seawater

(2011) Eileen Y. Koh et al.   Environmental Microbiology Reports

Proteorhodopsin-Bearing Bacteria in Antarctic Sea Ice

(2010) E. Y. Koh et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Predicted bacteriorhodopsin fromExiguobacterium sibiricumis a functional proton pump

(2010) L.E. Petrovskaya et al.   FEBS LETTERS

Response of Aerobic Anoxygenic Phototrophic Bacterial Diversity to Environment Conditions in Saline Lakes and Daotang River on the Tibetan Plateau, NW China

(2010) Hongchen Jiang et al.   GEOMICROBIOLOGY JOURNAL

On the rocks: the microbiology of Antarctic Dry Valley soils

(2010) S. Craig Cary et al.   NATURE REVIEWS MICROBIOLOGY

A new bioinformatics analysis tools framework at EMBL-EBI

(2010) M. Goujon et al.   NUCLEIC ACIDS RESEARCH

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Chlorophyll biosynthesis: spotlight on protochlorophyllide reduction

(2010) Christiane Reinbothe et al.   TRENDS IN PLANT SCIENCE

Diversity of aerobic anoxygenic phototrophic bacteria in paddy soil and their response to elevated atmospheric CO2

(2010) Youzhi Feng et al.   Microbial Biotechnology

Photoheterotrophic Microbes in the Arctic Ocean in Summer and Winter

(2009) M. T. Cottrell et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Salinarimonas rosea gen. nov., sp. nov., a new member of the  -2 subgroup of the Proteobacteria

(2009) J.-H. Liu et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Actinorhodopsin genes discovered in diverse freshwater habitats and among cultivated freshwater Actinobacteria

(2009) Adrian K Sharma et al.   ISME Journal

Free-air CO2 enrichment (FACE) enhances the biodiversity of purple phototrophic bacteria in flooded paddy soil

(2009) Youzhi Feng et al.   PLANT AND SOIL

Antarctic terrestrial life – challenging the history of the frozen continent?

(2008) Peter Convey et al.   BIOLOGICAL REVIEWS

Actinorhodopsins: proteorhodopsin-like gene sequences found predominantly in non-marine environments

(2008) Adrian K. Sharma et al.   ENVIRONMENTAL MICROBIOLOGY