Reproducibility of pyrosequencing data for biodiversity assessment in complex communities
出版年份 2014 全文链接
标题
Reproducibility of pyrosequencing data for biodiversity assessment in complex communities
作者
关键词
-
出版物
Methods in Ecology and Evolution
Volume 5, Issue 9, Pages 881-890
出版商
Wiley
发表日期
2014-07-16
DOI
10.1111/2041-210x.12230
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Performance comparison of genetic markers for high-throughput sequencing-based biodiversity assessment in complex communities
- (2014) Aibin Zhan et al. Molecular Ecology Resources
- Influence of Artifact Removal on Rare Species Recovery in Natural Complex Communities Using High-Throughput Sequencing
- (2014) Aibin Zhan et al. PLoS One
- From molecules to dynamic biological communities
- (2013) Daniel McDonald et al. BIOLOGY & PHILOSOPHY
- Analysis of soil fungal communities by amplicon pyrosequencing: current approaches to data analysis and the introduction of the pipeline SEED
- (2013) Tomáš Větrovský et al. BIOLOGY AND FERTILITY OF SOILS
- Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding
- (2013) Yinqiu Ji et al. ECOLOGY LETTERS
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- High sensitivity of 454 pyrosequencing for detection of rare species in aquatic communities
- (2013) Aibin Zhan et al. Methods in Ecology and Evolution
- Associating microbiome composition with environmental covariates using generalized UniFrac distances
- (2012) Jun Chen et al. BIOINFORMATICS
- The widely used small subunit 18S rDNA molecule greatly underestimates true diversity in biodiversity surveys of the meiofauna
- (2012) C. Q. Tang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring
- (2012) Douglas W. Yu et al. Methods in Ecology and Evolution
- UCHIME improves sensitivity and speed of chimera detection
- (2011) Robert C. Edgar et al. BIOINFORMATICS
- CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation
- (2011) Surendra Kumar et al. BMC BIOINFORMATICS
- Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes
- (2011) Thomas M. Gihring et al. ENVIRONMENTAL MICROBIOLOGY
- Reproducibility and quantitation of amplicon sequencing-based detection
- (2011) Jizhong Zhou et al. ISME Journal
- High consistency between replicate 454 pyrosequencing analyses of ectomycorrhizal plant root samples
- (2011) Håvard Kauserud et al. MYCORRHIZA
- Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos
- (2011) Mehrdad Hajibabaei et al. PLoS One
- Spatial patterns of bacterial richness and evenness in the NW Mediterranean Sea explored by pyrosequencing of the 16S rRNA
- (2010) T Pommier et al. AQUATIC MICROBIAL ECOLOGY
- Replicate or lie
- (2010) James I. Prosser ENVIRONMENTAL MICROBIOLOGY
- UniFrac: an effective distance metric for microbial community comparison
- (2010) Catherine Lozupone et al. ISME Journal
- Soil bacterial and fungal communities across a pH gradient in an arable soil
- (2010) Johannes Rousk et al. ISME Journal
- Bacterial diversity in a glacier foreland of the high Arctic
- (2010) URSEL M.E. SCHÜTTE et al. MOLECULAR ECOLOGY
- Second-generation sequencing derived insights into the temporal biodiversity dynamics of freshwater protists
- (2010) SIMON CREER MOLECULAR ECOLOGY
- 454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases
- (2010) Leho Tedersoo et al. NEW PHYTOLOGIST
- Second-generation environmental sequencing unmasks marine metazoan biodiversity
- (2010) Vera G. Fonseca et al. Nature Communications
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- (2009) P. D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates
- (2009) Victor Kunin et al. ENVIRONMENTAL MICROBIOLOGY
- Systematic artifacts in metagenomes from complex microbial communities
- (2009) Vicente Gomez-Alvarez et al. ISME Journal
- FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
- (2009) M. N. Price et al. MOLECULAR BIOLOGY AND EVOLUTION
- The rational exploration of microbial diversity
- (2008) Christopher Quince et al. ISME Journal
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
- Spatial scaling of functional gene diversity across various microbial taxa
- (2008) J. Zhou et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Environmental Genomics Reveals a Single-Species Ecosystem Deep Within Earth
- (2008) D. Chivian et al. SCIENCE
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started