Tet2 and Tet3 cooperate with B-lineage transcription factors to regulate DNA modification and chromatin accessibility
出版年份 2016 全文链接
标题
Tet2 and Tet3 cooperate with B-lineage transcription factors to regulate DNA modification and chromatin accessibility
作者
关键词
-
出版物
eLife
Volume 5, Issue -, Pages -
出版商
eLife Sciences Organisation, Ltd.
发表日期
2016-11-21
DOI
10.7554/elife.18290
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Pioneering Activity of the C-Terminal Domain of EBF1 Shapes the Chromatin Landscape for B Cell Programming
- (2016) Sören Boller et al. IMMUNITY
- TET proteins regulate the lineage specification and TCR-mediated expansion of iNKT cells
- (2016) Ageliki Tsagaratou et al. NATURE IMMUNOLOGY
- deepTools2: a next generation web server for deep-sequencing data analysis
- (2016) Fidel Ramírez et al. NUCLEIC ACIDS RESEARCH
- De novo DNA Methyltransferases Dnmt3a and Dnmt3b regulate the onset ofIgκlight chain rearrangement during early B-cell development
- (2015) Anand Manoharan et al. EUROPEAN JOURNAL OF IMMUNOLOGY
- The Transcription Factor NFAT Promotes Exhaustion of Activated CD8 + T Cells
- (2015) Gustavo J. Martinez et al. IMMUNITY
- WT1 Recruits TET2 to Regulate Its Target Gene Expression and Suppress Leukemia Cell Proliferation
- (2015) Yiping Wang et al. MOLECULAR CELL
- Function and information content of DNA methylation
- (2015) Dirk Schübeler NATURE
- Insulator dysfunction and oncogene activation in IDH mutant gliomas
- (2015) William A. Flavahan et al. NATURE
- Whole-genome fingerprint of the DNA methylome during human B cell differentiation
- (2015) Marta Kulis et al. NATURE GENETICS
- TET1 is a tumor suppressor of hematopoietic malignancy
- (2015) Luisa Cimmino et al. NATURE IMMUNOLOGY
- Histone reader BRWD1 targets and restricts recombination to the Igk locus
- (2015) Malay Mandal et al. NATURE IMMUNOLOGY
- The chromatin remodeler Brg1 activates enhancer repertoires to establish B cell identity and modulate cell growth
- (2015) Claudia Bossen et al. NATURE IMMUNOLOGY
- New roles for DNA cytosine modification, eRNA, anchors, and superanchors in developing B cell progenitors
- (2015) Christopher Benner et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Simultaneous deletion of the methylcytosine oxidases Tet1 and Tet3 increases transcriptome variability in early embryogenesis
- (2015) Jinsuk Kang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Acute loss of TET function results in aggressive myeloid cancer in mice
- (2015) Jungeun An et al. Nature Communications
- Reversing DNA Methylation: Mechanisms, Genomics, and Biological Functions
- (2014) Hao Wu et al. CELL
- TET proteins and 5-methylcytosine oxidation in hematological cancers
- (2014) Myunggon Ko et al. IMMUNOLOGICAL REVIEWS
- 5mC Oxidation by Tet2 Modulates Enhancer Activity and Timing of Transcriptome Reprogramming during Differentiation
- (2014) Gary C. Hon et al. MOLECULAR CELL
- Transcriptional enhancers: from properties to genome-wide predictions
- (2014) Daria Shlyueva et al. NATURE REVIEWS GENETICS
- Notes on the role of dynamic DNA methylation in mammalian development
- (2014) Timothy H. Bestor et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Connections between TET proteins and aberrant DNA modification in cancer
- (2014) Yun Huang et al. TRENDS IN GENETICS
- Epigenetic Regulation of Monoallelic Rearrangement (Allelic Exclusion) of Antigen Receptor Genes
- (2014) Rena Levin-Klein et al. Frontiers in Immunology
- BSeQC: quality control of bisulfite sequencing experiments
- (2013) Xueqiu Lin et al. BIOINFORMATICS
- MEDIPS: genome-wide differential coverage analysis of sequencing data derived from DNA enrichment experiments
- (2013) Matthias Lienhard et al. BIOINFORMATICS
- BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data
- (2013) Weilong Guo et al. BMC GENOMICS
- Genome-wide Analysis Reveals TET- and TDG-Dependent 5-Methylcytosine Oxidation Dynamics
- (2013) Li Shen et al. CELL
- Mechanisms of Programmed DNA Lesions and Genomic Instability in the Immune System
- (2013) Frederick W. Alt et al. CELL
- Genome-wide Profiling of 5-Formylcytosine Reveals Its Roles in Epigenetic Priming
- (2013) Chun-Xiao Song et al. CELL
- Dynamic Readers for 5-(Hydroxy)Methylcytosine and Its Oxidized Derivatives
- (2013) Cornelia G. Spruijt et al. CELL
- Transcription-coupled eviction of histones H2A/H2B governs V(D)J recombination
- (2013) Sarah Bevington et al. EMBO JOURNAL
- O-GlcNAcylation and 5-Methylcytosine Oxidation: An Unexpected Association between OGT and TETs
- (2013) Anand Balasubramani et al. MOLECULAR CELL
- Modulation of TET2 expression and 5-methylcytosine oxidation by the CXXC domain protein IDAX
- (2013) Myunggon Ko et al. NATURE
- Charting a dynamic DNA methylation landscape of the human genome
- (2013) Michael J. Ziller et al. NATURE
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- TETonic shift: biological roles of TET proteins in DNA demethylation and transcription
- (2013) William A. Pastor et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- A Reference Methylome Database and Analysis Pipeline to Facilitate Integrative and Comparative Epigenomics
- (2013) Qiang Song et al. PLoS One
- Meta-analysis of IDH-mutant cancers identifies EBF1 as an interaction partner for TET2
- (2013) Paul Guilhamon et al. Nature Communications
- PU.1 target genes undergo Tet2-coupled demethylation and DNMT3b-mediated methylation in monocyte-to-osteoclast differentiation
- (2013) Lorenzo de la Rica et al. GENOME BIOLOGY
- Chromatin Topology and the Regulation of Antigen Receptor Assembly
- (2012) Claudia Bossen et al. Annual Review of Immunology
- Germinal Centers
- (2012) Gabriel D. Victora et al. Annual Review of Immunology
- MeCP2 Binds to 5hmC Enriched within Active Genes and Accessible Chromatin in the Nervous System
- (2012) Marian Mellén et al. CELL
- The accessible chromatin landscape of the human genome
- (2012) Robert E. Thurman et al. NATURE
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- The GLIB technique for genome-wide mapping of 5-hydroxymethylcytosine
- (2012) William A Pastor et al. Nature Protocols
- The anti-CMS technique for genome-wide mapping of 5-hydroxymethylcytosine
- (2012) Yun Huang et al. Nature Protocols
- Tet1 and Tet2 Regulate 5-Hydroxymethylcytosine Production and Cell Lineage Specification in Mouse Embryonic Stem Cells
- (2011) Kian Peng Koh et al. Cell Stem Cell
- Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
- (2011) L. Song et al. GENOME RESEARCH
- Directional DNA Methylation Changes and Complex Intermediate States Accompany Lineage Specificity in the Adult Hematopoietic Compartment
- (2011) Emily Hodges et al. MOLECULAR CELL
- The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes
- (2011) Tian-Peng Gu et al. NATURE
- Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells
- (2011) William A. Pastor et al. NATURE
- Ten-Eleven-Translocation 2 (TET2) negatively regulates homeostasis and differentiation of hematopoietic stem cells in mice
- (2011) M. Ko et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Tet-Mediated Formation of 5-Carboxylcytosine and Its Excision by TDG in Mammalian DNA
- (2011) Y.-F. He et al. SCIENCE
- Tet Proteins Can Convert 5-Methylcytosine to 5-Formylcytosine and 5-Carboxylcytosine
- (2011) S. Ito et al. SCIENCE
- Identification and Characterization of Enhancers Controlling the Inflammatory Gene Expression Program in Macrophages
- (2010) Serena Ghisletti et al. IMMUNITY
- The Ig Gene Enhancers, E3' and Ed, Are Essential for Triggering Transcription
- (2010) X. Zhou et al. JOURNAL OF IMMUNOLOGY
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2
- (2010) Myunggon Ko et al. NATURE
- A global network of transcription factors, involving E2A, EBF1 and Foxo1, that orchestrates B cell fate
- (2010) Yin C Lin et al. NATURE IMMUNOLOGY
- The Behaviour of 5-Hydroxymethylcytosine in Bisulfite Sequencing
- (2010) Yun Huang et al. PLoS One
- Histone H3K27ac separates active from poised enhancers and predicts developmental state
- (2010) M. P. Creyghton et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- BSMAP: whole genome bisulfite sequence MAPping program
- (2009) Yuanxin Xi et al. BMC BIOINFORMATICS
- Mammalian cytosine methylation at a glance
- (2009) S. K. T. Ooi et al. JOURNAL OF CELL SCIENCE
- Conversion of 5-Methylcytosine to 5-Hydroxymethylcytosine in Mammalian DNA by MLL Partner TET1
- (2009) M. Tahiliani et al. SCIENCE
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