Structure and evolutionary history of a large family of NLR proteins in the zebrafish

Creating reference gene annotation for the mouse C57BL6/J genome assembly

(2015) Jonathan M. Mudge et al.   MAMMALIAN GENOME

The draft genome of the grass carp (Ctenopharyngodon idellus) provides insights into its evolution and vegetarian adaptation

(2015) Yaping Wang et al.   NATURE GENETICS

Using optical mapping data for the improvement of vertebrate genome assemblies

(2015) Kerstin Howe et al.   GigaScience

The NLR-related protein NWD1 is associated with prostate cancer and modulates androgen receptor signaling

(2015) Ricardo G. Correa et al.   Oncotarget

Figmop: a profile HMM to identify genes and bypass troublesome gene models in draft genomes

(2014) David M. Curran et al.   BIOINFORMATICS

OrthoInspector 2.0: Software and database updates

(2014) Benjamin Linard et al.   BIOINFORMATICS

Zebrafish as a model for zoonotic aquatic pathogens

(2014) Hannah M. Rowe et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Studying the immune response to human viral infections using zebrafish

(2014) Michelle F. Goody et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Wild Sex in Zebrafish: Loss of the Natural Sex Determinant in Domesticated Strains

(2014) C. A. Wilson et al.   GENETICS

The Characterization of Sponge NLRs Provides Insight into the Origin and Evolution of This Innate Immune Gene Family in Animals

(2013) Benedict Yuen et al.   MOLECULAR BIOLOGY AND EVOLUTION

The zebrafish reference genome sequence and its relationship to the human genome

(2013) Kerstin Howe et al.   NATURE

Lineage-Specific Expansion of IFIT Gene Family: An Insight into Coevolution with IFN Gene Family

(2013) Ying Liu et al.   PLoS One

Lamprey immunity is far from primitive

(2013) J. P. Rast et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Definition of a third VLR gene in hagfish

(2013) J. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ParaAT: A parallel tool for constructing multiple protein-coding DNA alignments

(2012) Zhang Zhang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

A new eye on NLR proteins: focused on clarity or diffused by complexity?

(2012) Vera Bonardi et al.   CURRENT OPINION IN IMMUNOLOGY

The Complex NOD-Like Receptor Repertoire of the Coral Acropora digitifera Includes Novel Domain Combinations

(2012) Mayuko Hamada et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multiple Sex-Associated Regions and a Putative Sex Chromosome in Zebrafish Revealed by RAD Mapping and Population Genomics

(2012) Jennifer L. Anderson et al.   PLoS One

Gene duplication as a mechanism of genomic adaptation to a changing environment

(2012) F. A. Kondrashov   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

FinTRIMs, fish virus-inducible proteins with E3 ubiquitin ligase activity

(2011) Lieke M. van der Aa et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Mapping the interaction of Snf1 with TORC1 in Saccharomyces cerevisiae

(2011) J. Zhang et al.   Molecular Systems Biology

NLR functions beyond pathogen recognition

(2011) Thomas A Kufer et al.   NATURE IMMUNOLOGY

KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies

(2010) Dapeng Wang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

A large new subset of TRIM genes highly diversified by duplication and positive selection in teleost fish

(2009) Lieke M van der Aa et al.   BMC BIOLOGY

Population genetic models of duplicated genes

(2009) Hideki Innan   GENETICA

The roles of TLRs, RLRs and NLRs in pathogen recognition

(2009) T. Kawai et al.   INTERNATIONAL IMMUNOLOGY

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Genomic analysis of the TRIM family reveals two groups of genes with distinct evolutionary properties

(2008) Marco Sardiello et al.   BMC EVOLUTIONARY BIOLOGY

A genomic view of the NOD-like receptor family in teleost fish: identification of a novel NLR subfamily in zebrafish

(2008) Kerry J Laing et al.   BMC EVOLUTIONARY BIOLOGY

Genomic analysis of the immune gene repertoire of amphioxus reveals extraordinary innate complexity and diversity

(2008) S. Huang et al.   GENOME RESEARCH

The NLR Gene Family: A Standard Nomenclature

(2008) Jenny P.-Y. Ting et al.   IMMUNITY

The Nod-Like Receptor (NLR) Family: A Tale of Similarities and Differences

(2008) Martina Proell et al.   PLoS One

Transcriptomic and genomic evolution under constant cold in Antarctic notothenioid fish

(2008) Z. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA