The molecular basis of metabolic cycles and their relationship to circadian rhythms

Methionine Metabolism Alters Oxidative Stress Resistance via the Pentose Phosphate Pathway

(2016) Kate Campbell et al.   ANTIOXIDANTS & REDOX SIGNALING

Cross-talk between circadian clocks, sleep-wake cycles, and metabolic networks: Dispelling the darkness

(2016) Sandipan Ray et al.   BIOESSAYS

The circadian system as an organizer of metabolism

(2016) Jennifer M. Hurley et al.   FUNGAL GENETICS AND BIOLOGY

Nucleosome repositioning underlies dynamic gene expression

(2016) Nicolas Nocetti et al.   GENES & DEVELOPMENT

Suppression of WHITE COLLAR-independentfrequencyTranscription by Histone H3 Lysine 36 Methyltransferase SET-2 Is Necessary for Clock Function inNeurospora

(2016) Guangyan Sun et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Reduced Histone Expression or a Defect in Chromatin Assembly Induces Respiration

(2016) Luciano Galdieri et al.   MOLECULAR AND CELLULAR BIOLOGY

Cell cycle Start is coupled to entry into the yeast metabolic cycle across diverse strains and growth rates

(2016) Anthony J. Burnetti et al.   MOLECULAR BIOLOGY OF THE CELL

Cyclin-Dependent Kinase Co-Ordinates Carbohydrate Metabolism and Cell Cycle in S. cerevisiae

(2016) Gang Zhao et al.   MOLECULAR CELL

Reciprocal Control of the Circadian Clock and Cellular Redox State - a Critical Appraisal

(2016)   MOLECULES AND CELLS

The Interleaved Genome

(2016) Jane Mellor et al.   TRENDS IN GENETICS

Interdependence of nutrient metabolism and the circadian clock system: Importance for metabolic health

(2016) Aleix Ribas-Latre et al.   Molecular Metabolism

Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C

(2015) Tsung-Han S. Hsieh et al.   CELL

The Circadian Protein BMAL1 Regulates Translation in Response to S6K1-Mediated Phosphorylation

(2015) Jonathan O. Lipton et al.   CELL

Metabolic Cycles in Yeast Share Features Conserved among Circadian Rhythms

(2015) Helen C. Causton et al.   CURRENT BIOLOGY

Acetyl-CoA and the regulation of metabolism: mechanisms and consequences

(2015) Lei Shi et al.   CURRENT OPINION IN CELL BIOLOGY

Ribosome profiling reveals an important role for translational control in circadian gene expression

(2015) Christopher Jang et al.   GENOME RESEARCH

Ribosome profiling reveals the rhythmic liver translatome and circadian clock regulation by upstream open reading frames

(2015) Peggy Janich et al.   GENOME RESEARCH

Identifying Novel Transcriptional Regulators with Circadian Expression

(2015) Sandra Schick et al.   MOLECULAR AND CELLULAR BIOLOGY

High-Resolution Chromatin Dynamics during a Yeast Stress Response

(2015) Assaf Weiner et al.   MOLECULAR CELL

Sense and antisense transcription are associated with distinct chromatin architectures across genes

(2015) Struan C. Murray et al.   NUCLEIC ACIDS RESEARCH

Cycling Transcriptional Networks Optimize Energy Utilization on a Genome Scale

(2015) Guang-Zhong Wang et al.   Cell Reports

The chromatin remodelers RSC and ISW1 display functional and chromatin-based promoter antagonism

(2015) Timothy J Parnell et al.   eLife

Metabolic and Nontranscriptional Circadian Clocks: Eukaryotes

(2014) Akhilesh B. Reddy et al.   Annual Review of Biochemistry

The return of metabolism: biochemistry and physiology of the pentose phosphate pathway

(2014) Anna Stincone et al.   BIOLOGICAL REVIEWS

The cyanobacterial clock and metabolism

(2014) Gopal Pattanayak et al.   CURRENT OPINION IN MICROBIOLOGY

CLOCK:BMAL1 is a pioneer-like transcription factor

(2014) J. S. Menet et al.   GENES & DEVELOPMENT

Class IIa Histone Deacetylases Are Conserved Regulators of Circadian Function

(2014) Paul C. M. Fogg et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Extensive Oscillatory Gene Expression during C. elegans Larval Development

(2014) Gert-Jan Hendriks et al.   MOLECULAR CELL

Cell cycle population effects in perturbation studies

(2014) E. O'Duibhir et al.   Molecular Systems Biology

Transcriptional interference by antisense RNA is required for circadian clock function

(2014) Zhihong Xue et al.   NATURE

High-temporal-resolution view of transcription and chromatin states across distinct metabolic states in budding yeast

(2014) Zheng Kuang et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Circadian rhythm of hyperoxidized peroxiredoxin II is determined by hemoglobin autoxidation and the 20S proteasome in red blood cells

(2014) C.-S. Cho et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of clock-regulated genes inNeurosporareveals widespread posttranscriptional control of metabolic potential

(2014) Jennifer M. Hurley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rewiring AMPK and Mitochondrial Retrograde Signaling for Metabolic Control of Aging and Histone Acetylation in Respiratory-Defective Cells

(2014) R. Magnus N. Friis et al.   Cell Reports

In-Vivo Quantitative Proteomics Reveals a Key Contribution of Post-Transcriptional Mechanisms to the Circadian Regulation of Liver Metabolism

(2014) Maria S. Robles et al.   PLoS Genetics

Circadian Redox and Metabolic Oscillations in Mammalian Systems

(2013) John S. O'Neill et al.   ANTIOXIDANTS & REDOX SIGNALING

Sulfur Amino Acids Regulate Translational Capacity and Metabolic Homeostasis through Modulation of tRNA Thiolation

(2013) Sunil Laxman et al.   CELL

Gcn5 and Sirtuins Regulate Acetylation of the Ribosomal Protein Transcription Factor Ifh1

(2013) Michael Downey et al.   CURRENT BIOLOGY

Dissociation of Circadian and Circatidal Timekeeping in the Marine Crustacean Eurydice pulchra

(2013) Lin Zhang et al.   CURRENT BIOLOGY

Cycles in spatial and temporal chromosomal organization driven by the circadian clock

(2013) Lorena Aguilar-Arnal et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Nascent-Seq analysis ofDrosophilacycling gene expression

(2013) Joseph Rodriguez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Acetyl-CoA induces transcription of the key G1 cyclin CLN3 to promote entry into the cell division cycle in Saccharomyces cerevisiae

(2013) L. Shi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Circadian Clock NAD+ Cycle Drives Mitochondrial Oxidative Metabolism in Mice

(2013) C. B. Peek et al.   SCIENCE

Circadian Oscillations of Protein-Coding and Regulatory RNAs in a Highly Dynamic Mammalian Liver Epigenome

(2012) Christopher Vollmers et al.   Cell Metabolism

Dynamics of oscillatory phenotypes in Saccharomyces cerevisiae reveal a network of genome-wide transcriptional oscillators

(2012) Shwe L. Chin et al.   FEBS Journal

Nascent-Seq Indicates Widespread Cotranscriptional RNA Editing in Drosophila

(2012) Joseph Rodriguez et al.   MOLECULAR CELL

Circadian topology of metabolism

(2012) Joseph Bass   NATURE

The Yin and Yang of Yeast Transcription: Elements of a Global Feedback System between Metabolism and Chromatin

(2012) Rainer Machné et al.   PLoS One

Toward the Beginning of Time: Circadian Rhythms in Metabolism Precede Rhythms in Clock Gene Expression in Mouse Embryonic Stem Cells

(2012) Jiffin K. Paulose et al.   PLoS One

Coordination of the transcriptome and metabolome by the circadian clock

(2012) K. L. Eckel-Mahan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The human circadian metabolome

(2012) R. Dallmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cold-Inducible RNA-Binding Protein Modulates Circadian Gene Expression Posttranscriptionally

(2012) J. Morf et al.   SCIENCE

Transcriptional Architecture and Chromatin Landscape of the Core Circadian Clock in Mammals

(2012) N. Koike et al.   SCIENCE

Systematic Dissection of Roles for Chromatin Regulators in a Yeast Stress Response

(2012) Assaf Weiner et al.   PLOS BIOLOGY

Nascent-Seq reveals novel features of mouse circadian transcriptional regulation

(2012) Jerome S Menet et al.   eLife

PSK2 coordinates glucose metabolism and utilization to maintain Ultradian clock-coupled respiratory oscillation in Saccharomyces cerevisiae yeast

(2011) Yuhui Ouyang et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Regulation of the yeast metabolic cycle by transcription factors with periodic activities

(2011) Aliz R Rao et al.   BMC Systems Biology

Coupling among growth rate response, metabolic cycle, and cell division cycle in yeast

(2011) Nikolai Slavov et al.   MOLECULAR BIOLOGY OF THE CELL

Acetyl-CoA Induces Cell Growth and Proliferation by Promoting the Acetylation of Histones at Growth Genes

(2011) Ling Cai et al.   MOLECULAR CELL

Circadian clocks in human red blood cells

(2011) John S. O’Neill et al.   NATURE

Metabolic cycling without cell division cycling in respiring yeast

(2011) N. Slavov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gcn5 regulates the dissociation of SWI/SNF from chromatin by acetylation of Swi2/Snf2

(2010) J.-H. Kim et al.   GENES & DEVELOPMENT

A circadian clock in Saccharomyces cerevisiae

(2010) Z. Eelderink-Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Exosome Regulates Circadian Gene Expression in a Posttranscriptional Negative Feedback Loop

(2009) Jinhu Guo et al.   CELL

Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target

(2009) Szymon Swiezewski et al.   NATURE

The NAD+-Dependent Deacetylase SIRT1 Modulates CLOCK-Mediated Chromatin Remodeling and Circadian Control

(2008) Yasukazu Nakahata et al.   CELL

Design principles of biochemical oscillators

(2008) Béla Novák et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Circadian Transcription Contributes to Core Period Determination in Drosophila

(2008) Sebastian Kadener et al.   PLOS BIOLOGY

Identification and evaluation of cycling yeast metabolites in two-dimensional comprehensive gas chromatography–time-of-flight-mass spectrometry data

(2007) Rachel E. Mohler et al.   JOURNAL OF CHROMATOGRAPHY A

Coordination of Growth Rate, Cell Cycle, Stress Response, and Metabolic Activity in Yeast

(2007) Matthew J. Brauer et al.   MOLECULAR BIOLOGY OF THE CELL