High-temporal-resolution view of transcription and chromatin states across distinct metabolic states in budding yeast

Dynamic Transformations of Genome-wide Epigenetic Marking and Transcriptional Control Establish T Cell Identity

(2012) Jingli A. Zhang et al.   CELL

A Temporal Chromatin Signature in Human Embryonic Stem Cells Identifies Regulators of Cardiac Development

(2012) Sharon L. Paige et al.   CELL

Dynamic and Coordinated Epigenetic Regulation of Developmental Transitions in the Cardiac Lineage

(2012) Joseph A. Wamstad et al.   CELL

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Transcriptional Architecture and Chromatin Landscape of the Core Circadian Clock in Mammals

(2012) N. Koike et al.   SCIENCE

Gatekeepers of chromatin: Small metabolites elicit big changes in gene expression

(2012) Salma Kaochar et al.   TRENDS IN BIOCHEMICAL SCIENCES

Systematic Dissection of Roles for Chromatin Regulators in a Yeast Stress Response

(2012) Assaf Weiner et al.   PLOS BIOLOGY

Stable and dynamic nucleosome states during a meiotic developmental process

(2011) L. Zhang et al.   GENOME RESEARCH

Histone Chaperones: Modulators of Chromatin Marks

(2011) Nikita Avvakumov et al.   MOLECULAR CELL

Acetyl-CoA Induces Cell Growth and Proliferation by Promoting the Acetylation of Histones at Growth Genes

(2011) Ling Cai et al.   MOLECULAR CELL

Diverse environmental stresses elicit distinct responses at the level of pre-mRNA processing in yeast

(2011) M. Bergkessel et al.   RNA

Behavior of a Metabolic Cycling Population at the Single Cell Level as Visualized by Fluorescent Gene Expression Reporters

(2010) Sunil Laxman et al.   PLoS One

Bidirectional promoters generate pervasive transcription in yeast

(2009) Zhenyu Xu et al.   NATURE

Histone H4 lysine 16 acetylation regulates cellular lifespan

(2009) Weiwei Dang et al.   NATURE

Probing Nucleosome Function: A Highly Versatile Library of Synthetic Histone H3 and H4 Mutants

(2008) Junbiao Dai et al.   CELL

An integrated software system for analyzing ChIP-chip and ChIP-seq data

(2008) Hongkai Ji et al.   NATURE BIOTECHNOLOGY

Cell Cycle– and Chaperone-Mediated Regulation of H3K56ac Incorporation in Yeast

(2008) Tommy Kaplan et al.   PLoS Genetics

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY