Sense and antisense transcription are associated with distinct chromatin architectures across genes

A high-throughput ChIP-Seq for large-scale chromatin studies

(2015) C. D. Chabbert et al.   Molecular Systems Biology

Uncoupling histone turnover from transcription-associated histone H3 modifications

(2015) Paolo Ferrari et al.   NUCLEIC ACIDS RESEARCH

Transcription mediated insulation and interference direct gene cluster expression switches

(2014) Tania Nguyen et al.   eLife

Extensive transcriptional heterogeneity revealed by isoform profiling

(2013) Vicent Pelechano et al.   NATURE

Bimodal expression of PHO84 is modulated by early termination of antisense transcription

(2013) Manuele Castelnuovo et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Transcription of Two Long Noncoding RNAs Mediates Mating-Type Control of Gametogenesis in Budding Yeast

(2012) Folkert J. van Werven et al.   CELL

Genome-wide Nucleosome Specificity and Directionality of Chromatin Remodelers

(2012) Kuangyu Yen et al.   CELL

Paf1 Restricts Gcn4 Occupancy and Antisense Transcription at the ARG1 Promoter

(2012) E. M. Crisucci et al.   MOLECULAR AND CELLULAR BIOLOGY

Expression Noise and Acetylation Profiles Distinguish HDAC Functions

(2012) Leehee Weinberger et al.   MOLECULAR CELL

A Functional Evolutionary Approach to Identify Determinants of Nucleosome Positioning: A Unifying Model for Establishing the Genome-wide Pattern

(2012) Amanda L. Hughes et al.   MOLECULAR CELL

Set2 methylation of histone H3 lysine 36 suppresses histone exchange on transcribed genes

(2012) Swaminathan Venkatesh et al.   NATURE

Chromatin remodelers Isw1 and Chd1 maintain chromatin structure during transcription by preventing histone exchange

(2012) Michaela Smolle et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The Rpd3 Core Complex Is a Chromatin Stabilization Module

(2011) Xiao-Fen Chen et al.   CURRENT BIOLOGY

Progressive methylation of ageing histones by Dot1 functions as a timer

(2011) Dirk De Vos et al.   EMBO REPORTS

Genome-wide function of H2B ubiquitylation in promoter and genic regions

(2011) K. Batta et al.   GENES & DEVELOPMENT

A genomic model of condition-specific nucleosome behavior explains transcriptional activity in yeast

(2011) J. B. Zaugg et al.   GENOME RESEARCH

A Comprehensive Genomic Binding Map of Gene and Chromatin Regulatory Proteins in Saccharomyces

(2011) Bryan J. Venters et al.   MOLECULAR CELL

Nascent transcript sequencing visualizes transcription at nucleotide resolution

(2011) L. Stirling Churchman et al.   NATURE

XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast

(2011) E. L. van Dijk et al.   NATURE

A pre-initiation complex at the 3′-end of genes drives antisense transcription independent of divergent sense transcription

(2011) Struan C. Murray et al.   NUCLEIC ACIDS RESEARCH

Noncoding RNAs in gene regulation

(2011) Maxime Wery et al.   Wiley Interdisciplinary Reviews-Systems Biology and Medicine

Patterns and Mechanisms of Ancestral Histone Protein Inheritance in Budding Yeast

(2011) Marta Radman-Livaja et al.   PLOS BIOLOGY

The Reality of Pervasive Transcription

(2011) Michael B. Clark et al.   PLOS BIOLOGY

The spatial distribution of cis regulatory elements in yeast promoters and its implications for transcriptional regulation

(2010) Zhenguo Lin et al.   BMC GENOMICS

Long antisense non-coding RNAs and their role in transcription and oncogenesis

(2010) Kevin V. Morris et al.   CELL CYCLE

Histone H2B ubiquitination and beyond

(2010) Mahesh B. Chandrasekharan et al.   Epigenetics

Phosphorylated Pol II CTD Recruits Multiple HDACs, Including Rpd3C(S), for Methylation-Dependent Deacetylation of ORF Nucleosomes

(2010) Chhabi K. Govind et al.   MOLECULAR CELL

Gene-specific RNA polymerase II phosphorylation and the CTD code

(2010) Hyunmin Kim et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Snf1p Regulates Gcn5p Transcriptional Activity by Antagonizing Spt3p

(2009) Y. Liu et al.   GENETICS

Bidirectional promoters generate pervasive transcription in yeast

(2009) Zhenyu Xu et al.   NATURE

Widespread bidirectional promoters are the major source of cryptic transcripts in yeast

(2009) Helen Neil et al.   NATURE

The logic of chromatin architecture and remodelling at promoters

(2009) Bradley R. Cairns   NATURE

Functional interplay between chromatin remodeling complexes RSC, SWI/SNF and ISWI in regulation of yeast heat shock genes

(2009) T. Y. Erkina et al.   NUCLEIC ACIDS RESEARCH

Two strategies for gene regulation by promoter nucleosomes

(2008) I. Tirosh et al.   GENOME RESEARCH

H2B Ubiquitylation Plays a Role in Nucleosome Dynamics during Transcription Elongation

(2008) Alastair B. Fleming et al.   MOLECULAR CELL

A ncRNA Modulates Histone Modification and mRNA Induction in the Yeast GAL Gene Cluster

(2008) Jonathan Houseley et al.   MOLECULAR CELL

The DNA-encoded nucleosome organization of a eukaryotic genome

(2008) Noam Kaplan et al.   NATURE

Single-RNA counting reveals alternative modes of gene expression in yeast

(2008) Daniel Zenklusen et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY