High-resolution QTL mapping for grain appearance traits and co-localization of chalkiness-associated differentially expressed candidate genes in rice

The need for new tools and investment to improve the accuracy of selecting for grain quality in rice

(2015) Jeanaflor Crystal T. Concepcion et al.   FIELD CROPS RESEARCH

Factors affecting head rice yield and chalkiness in indica rice

(2015) Lijie Zhou et al.   FIELD CROPS RESEARCH

Natural Variations in SLG7 Regulate Grain Shape in Rice

(2015) Y. Zhou et al.   GENETICS

Viscoelastic properties of starches and flours from two novel rice mutants induced by gamma irradiation

(2015) Xiangli Kong et al.   LWT-FOOD SCIENCE AND TECHNOLOGY

Copy number variation at the GL7 locus contributes to grain size diversity in rice

(2015) Yuexing Wang et al.   NATURE GENETICS

The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality

(2015) Shaokui Wang et al.   NATURE GENETICS

Identification of stable QTLs causing chalk in rice grains in nine environments

(2015) Xiangqian Zhao et al.   THEORETICAL AND APPLIED GENETICS

Identification of Genomic Regions and the Isoamylase Gene for Reduced Grain Chalkiness in Rice

(2015) Wenqian Sun et al.   PLoS One

An overview of global rice production, supply, trade, and consumption

(2014) Sumithra Muthayya et al.   Annals of the New York Academy of Sciences

Comparative mapping of chalkiness components in rice using five populations across two environments

(2014) Bo Peng et al.   BMC GENETICS

An ultra-high density bin-map for rapid QTL mapping for tassel and ear architecture in a large F2 maize population

(2014) Zongliang Chen et al.   BMC GENOMICS

A genome-wide association study of seed protein and oil content in soybean

(2014) Eun-Young Hwang et al.   BMC GENOMICS

Chalk5 encodes a vacuolar H+-translocating pyrophosphatase influencing grain chalkiness in rice

(2014) Yibo Li et al.   NATURE GENETICS

Diversity of Global Rice Markets and the Science Required for Consumer-Targeted Rice Breeding

(2014) Mariafe Calingacion et al.   PLoS One

Transcriptome analysis of Cymbidium sinense and its application to the identification of genes associated with floral development

(2013) Jianxia Zhang et al.   BMC GENOMICS

Sequencing-based genome-wide association study in rice

(2013) Bin Han et al.   CURRENT OPINION IN PLANT BIOLOGY

Dissecting yield-associated loci in super hybrid rice by resequencing recombinant inbred lines and improving parental genome sequences

(2013) Z.-Y. Gao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Highly efficient genotyping of rice biparental populations by GoldenGate assays based on parental resequencing

(2013) Wei Chen et al.   THEORETICAL AND APPLIED GENETICS

Quantitative Trait Loci for Grain Chalkiness and Endosperm Transparency Detected in Three Recombinant Inbred Line Populations of Indica Rice

(2013) De-yong MEI et al.   Journal of Integrative Agriculture

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3

(2012) Peng Qi et al.   CELL RESEARCH

Control of grain size, shape and quality by OsSPL16 in rice

(2012) Shaokui Wang et al.   NATURE GENETICS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

SmartGrain: High-Throughput Phenotyping Software for Measuring Seed Shape through Image Analysis

(2012) T. Tanabata et al.   PLANT PHYSIOLOGY

Exploring the Genetic Characteristics of Two Recombinant Inbred Line Populations via High-Density SNP Markers in Maize

(2012) Qingchun Pan et al.   PLoS One

Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice

(2012) X. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic bases of rice grain shape: so many genes, so little known

(2012) Rongyu Huang et al.   TRENDS IN PLANT SCIENCE

Identification of a Stable Quantitative Trait Locus for Percentage Grains with White Chalkiness in Rice (Oryza sativa)

(2011) Tao Guo et al.   Journal of Integrative Plant Biology

Gains in QTL Detection Using an Ultra-High Density SNP Map Based on Population Sequencing Relative to Traditional RFLP/SSR Markers

(2011) Huihui Yu et al.   PLoS One

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

From QTL to candidate gene: Genetical genomics of simple and complex traits in potato using a pooling strategy

(2010) Bjorn Kloosterman et al.   BMC GENOMICS

Distinct Regulation of Adaxial-Abaxial Polarity in Anther Patterning in Rice

(2010) T. Toriba et al.   PLANT CELL

Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing

(2010) W. Xie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Linking differential domain functions of the GS3 protein to natural variation of grain size in rice

(2010) H. Mao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mapping 49 quantitative trait loci at high resolution through sequencing-based genotyping of rice recombinant inbred lines

(2010) Lu Wang et al.   THEORETICAL AND APPLIED GENETICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

High-throughput genotyping by whole-genome resequencing

(2009) X. Huang et al.   GENOME RESEARCH

QTL mapping of grain quality traits in rice

(2009) Jue Lou et al.   JOURNAL OF CEREAL SCIENCE

Not just a grain of rice: the quest for quality

(2009) Melissa A. Fitzgerald et al.   TRENDS IN PLANT SCIENCE

Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight

(2008) Jianfeng Weng et al.   CELL RESEARCH

Mapping QTLs for milling yield and grain characteristics in a tropical japonica long grain cross

(2008) J.L. Kepiro et al.   JOURNAL OF CEREAL SCIENCE

Control of rice grain-filling and yield by a gene with a potential signature of domestication

(2008) Ertao Wang et al.   NATURE GENETICS

Deletion in a gene associated with grain size increased yields during rice domestication

(2008) Ayahiko Shomura et al.   NATURE GENETICS

Inactivation of the UGPase1 gene causes genic male sterility and endosperm chalkiness in rice (Oryza sativa L.)

(2008) Mi-Ok Woo et al.   PLANT JOURNAL

Fine mapping of the grain chalkiness QTL qPGWC-7 in rice (Oryza sativa L.)

(2008) Lijun Zhou et al.   THEORETICAL AND APPLIED GENETICS