Comparison of Archaeal and Bacterial Diversity in Methane Seep Carbonate Nodules and Host Sediments, Eel River Basin and Hydrate Ridge, USA

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

Carbonate-hosted methanotrophy represents an unrecognized methane sink in the deep sea

(2014) Jeffrey J. Marlow et al.   Nature Communications

Factors controlling the types of microbial consortia in cold-seep environments: A molecular and isotopic investigation of authigenic carbonates from the South China Sea

(2013) Hongxiang Guan et al.   CHEMICAL GEOLOGY

Nitrate-based niche differentiation by distinct sulfate-reducing bacteria involved in the anaerobic oxidation of methane

(2013) A Green-Saxena et al.   ISME Journal

Formation of carbonate chimneys in the Mediterranean Sea linked to deep-water oxygen depletion

(2013) Germain Bayon et al.   Nature Geoscience

Methane-Carbon Flow into the Benthic Food Web at Cold Seeps – A Case Study from the Costa Rica Subduction Zone

(2013) Helge Niemann et al.   PLoS One

Microbial nucleation of Mg-rich dolomite in exopolymeric substances under anoxic modern seawater salinity: New insight into an old enigma

(2012) Stefan Krause et al.   GEOLOGY

Archaea in metazoan diets: implications for food webs and biogeochemical cycling

(2012) Andrew R Thurber et al.   ISME Journal

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Microbial Diversity in Deep-sea Methane Seep Sediments Presented by SSU rRNA Gene Tag Sequencing

(2012) Takuro Nunoura et al.   MICROBES AND ENVIRONMENTS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification

(2011) David Berry et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

New insight into stratification of anaerobic methanotrophs in cold seep sediments

(2011) Irene Roalkvam et al.   FEMS MICROBIOLOGY ECOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Cold seep carbonates and associated cold-water corals at the Hikurangi Margin, New Zealand: New insights into fluid pathways, growth structures and geochronology

(2010) Volker Liebetrau et al.   MARINE GEOLOGY

Geological imprint of methane seepage on the seabed and biota of the convergent Hikurangi Margin, New Zealand: Box core and grab carbonate results

(2010) Kathleen A. Campbell et al.   MARINE GEOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Spatial Structure and Activity of Sedimentary Microbial Communities Underlying a Beggiatoa spp. Mat in a Gulf of Mexico Hydrocarbon Seep

(2010) Karen G. Lloyd et al.   PLoS One

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biogeochemical controls on authigenic carbonate formation at the Chapopote “asphalt volcano”, Bay of Campeche

(2009) Thomas H. Naehr et al.   CHEMICAL GEOLOGY

Enrichment of adsorbed methane in authigenic carbonate concretions of the Japan Trench

(2009) Akira Ijiri et al.   GEO-MARINE LETTERS

Patterns of carbonate authigenesis at the Kouilou pockmarks on the Congo deep-sea fan

(2009) Antonie Haas et al.   MARINE GEOLOGY

Pseudofossils in relict methane seep carbonates resemble endemic microbial consortia

(2009) Jake V. Bailey et al.   PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY

U–Th dating of carbonate nodules from methane seeps off Joetsu, Eastern Margin of Japan Sea

(2008) Yumiko Watanabe et al.   EARTH AND PLANETARY SCIENCE LETTERS

Carbonate formation by anaerobic oxidation of methane: Evidence from lipid biomarker and fossil 16S rDNA

(2008) A. Stadnitskaia et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Lifetime and cyclicity of fluid venting at forearc mound structures determined by tephrostratigraphy and radiometric dating of authigenic carbonates

(2008) S. Kutterolf et al.   GEOLOGY

A new constraint on the antiquity of anaerobic oxidation of methane: Late Pennsylvanian seep limestones from southern Namibia

(2008) Daniel Birgel et al.   GEOLOGY

Temporal evolution of methane cycling and phylogenetic diversity of archaea in sediments from a deep-sea whale-fall in Monterey Canyon, California

(2008) Shana K Goffredi et al.   ISME Journal

Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics

(2008) A. Pernthaler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rates of anaerobic oxidation of methane and authigenic carbonate mineralization in methane-rich deep-sea sediments inferred from models and geochemical profiles

(2007) Willliam Ussler et al.   EARTH AND PLANETARY SCIENCE LETTERS

13C-depleted biphytanic diacids as tracers of past anaerobic oxidation of methane

(2007) Daniel Birgel et al.   ORGANIC GEOCHEMISTRY