In situvisualization of newly synthesized proteins in environmental microbes using amino acid tagging and click chemistry

Quantitative, Time-Resolved Proteomic Analysis by Combining Bioorthogonal Noncanonical Amino Acid Tagging and Pulsed Stable Isotope Labeling by Amino Acids in Cell Culture

(2014) John D. Bagert et al.   MOLECULAR & CELLULAR PROTEOMICS

Dormancy Is Not Necessary or Sufficient for Bacterial Persistence

(2013) Mehmet A. Orman et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Detection of Metabolic Key Enzymes of Methane Turnover Processes in Cold Seep Microbial Biofilms

(2013) Christoph Wrede et al.   GEOMICROBIOLOGY JOURNAL

Insights from quantitative metaproteomics and protein-stable isotope probing into microbial ecology

(2013) Martin von Bergen et al.   ISME Journal

Evaluation and Optimization of Mass Spectrometric Settings during Data-dependent Acquisition Mode: Focus on LTQ-Orbitrap Mass Analyzers

(2013) Anastasia Kalli et al.   JOURNAL OF PROTEOME RESEARCH

QuaNCAT: quantitating proteome dynamics in primary cells

(2013) Andrew J M Howden et al.   NATURE METHODS

d-Amino Acid Chemical Reporters Reveal Peptidoglycan Dynamics of an Intracellular Pathogen

(2012) M. Sloan Siegrist et al.   ACS Chemical Biology

A Straightforward DOPE (Double Labeling of Oligonucleotide Probes)-FISH (FluorescenceIn SituHybridization) Method for Simultaneous Multicolor Detection of Six Microbial Populations

(2012) Faris Behnam et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Local Translation of Extranuclear Lamin B Promotes Axon Maintenance

(2012) Byung C. Yoon et al.   CELL

Infection-Induced Host Translational Blockage Inhibits Immune Responses and Epithelial Renewal in the Drosophila Gut

(2012) Sveta Chakrabarti et al.   Cell Host & Microbe

A single-cell view of ammonium assimilation in coral–dinoflagellate symbiosis

(2012) Mathieu Pernice et al.   ISME Journal

Selective enrichment of newly synthesized proteins for quantitative secretome analysis

(2012) Katrin Eichelbaum et al.   NATURE BIOTECHNOLOGY

Noncanonical Amino Acids in the Interrogation of Cellular Protein Synthesis

(2011) John T. Ngo et al.   ACCOUNTS OF CHEMICAL RESEARCH

Noncanonical Amino Acid Labeling in Vivo to Visualize and Affinity Purify Newly Synthesized Proteins in Larval Zebrafish

(2011) Flora I. Hinz et al.   ACS Chemical Neuroscience

Increasing the Efficacy of Bioorthogonal Click Reactions for Bioconjugation: A Comparative Study

(2011) Christen Besanceney-Webler et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Chlamydia Species-Dependent Differences in the Growth Requirement for Lysosomes

(2011) Scot P. Ouellette et al.   PLoS One

Carbon and nitrogen assimilation in deep subseafloor microbial cells

(2011) Y. Morono et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Respiration Response Imaging for Real-Time Detection of Microbial Function at the Single-Cell Level

(2010) M. C. Konopka et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Labeling Live Cells by Copper-Catalyzed Alkyne−Azide Click Chemistry

(2010) Vu Hong et al.   BIOCONJUGATE CHEMISTRY

Live-Cell Imaging of Cellular Proteins by a Strain-Promoted Azide-Alkyne Cycloaddition

(2010) Kimberly E. Beatty et al.   CHEMBIOCHEM

Bioorthogonal chemistry: recent progress and future directions

(2010) Reyna K. V. Lim et al.   CHEMICAL COMMUNICATIONS

Cu-free click cycloaddition reactions in chemical biology

(2010) John C. Jewett et al.   CHEMICAL SOCIETY REVIEWS

GeneFISH - an in situ technique for linking gene presence and cell identity in environmental microorganisms

(2010) Cristina Moraru et al.   ENVIRONMENTAL MICROBIOLOGY

Fixation-free fluorescence in situ hybridization for targeted enrichment of microbial populations

(2010) Suzan Yilmaz et al.   ISME Journal

Cleavable Biotin Probes for Labeling of Biomolecules via Azide−Alkyne Cycloaddition

(2010) Janek Szychowski et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Detection of Single Copy Genes by Two-Pass Tyramide Signal Amplification Fluorescence in situ Hybridization (Two-Pass TSA-FISH) with Single Oligonucleotide Probes

(2010) Shuji Kawakami et al.   MICROBES AND ENVIRONMENTS

Raman microspectroscopy reveals long-term extracellular activity of chlamydiae

(2010) Susanne Haider et al.   MOLECULAR MICROBIOLOGY

In situ visualization and dynamics of newly synthesized proteins in rat hippocampal neurons

(2010) Daniela C Dieterich et al.   NATURE NEUROSCIENCE

Protein-based stable isotope probing

(2010) Nico Jehmlich et al.   Nature Protocols

Copper-free click chemistry in living animals

(2010) P. V. Chang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

(2010) Y. Taniguchi et al.   SCIENCE

A Pyrrolysine Analogue for Protein Click Chemistry

(2009) Tomasz Fekner et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Selective Fluorescence Labeling of Lipids in Living Cells

(2009) Anne B. Neef et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Analysis and Optimization of Copper-Catalyzed Azide–Alkyne Cycloaddition for Bioconjugation

(2009) Vu Hong et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Bioorthogonal Chemistry: Fishing for Selectivity in a Sea of Functionality

(2009) Ellen M. Sletten et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Anaerobic Oxidation of Methane: Progress with an Unknown Process

(2009) Katrin Knittel et al.   Annual Review of Microbiology

Double Labeling of Oligonucleotide Probes for Fluorescence In Situ Hybridization (DOPE-FISH) Improves Signal Intensity and Increases rRNA Accessibility

(2009) K. Stoecker et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Click Chemistry and Bioorthogonal Reactions: Unprecedented Selectivity in the Labeling of Biological Molecules

(2009) Michael D. Best   BIOCHEMISTRY

Distribution and activity of diazotrophs in the Eastern Equatorial Atlantic

(2009) Rachel A. Foster et al.   ENVIRONMENTAL MICROBIOLOGY

Patterns of15N assimilation and growth of methanotrophic ANME-2 archaea and sulfate-reducing bacteria within structured syntrophic consortia revealed by FISH-SIMS

(2009) Victoria J. Orphan et al.   ENVIRONMENTAL MICROBIOLOGY

Selective Enrichment of Azide-Containing Peptides from Complex Mixtures

(2009) Merel A. Nessen et al.   JOURNAL OF PROTEOME RESEARCH

Cell-selective metabolic labeling of proteins

(2009) John T Ngo et al.   Nature Chemical Biology

Fixation and fate of C and N in the cyanobacterium Trichodesmium using nanometer-scale secondary ion mass spectrometry

(2009) J. A. Finzi-Hart et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep-Sea Archaea Fix and Share Nitrogen in Methane-Consuming Microbial Consortia

(2009) A. E. Dekas et al.   SCIENCE

Linking Microbial Phylogeny to Metabolic Activity at the Single-Cell Level by Using Enhanced Element Labeling-Catalyzed Reporter Deposition Fluorescence In Situ Hybridization (EL-FISH) and NanoSIMS

(2008) S. Behrens et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Chemoselective modification of proteins: hitting the target

(2008) Isaac S. Carrico   CHEMICAL SOCIETY REVIEWS

Real-time detection of actively metabolizing microbes by redox sensing as applied to methylotroph populations in Lake Washington

(2008) Marina G Kalyuzhnaya et al.   ISME Journal

Second-Generation Difluorinated Cyclooctynes for Copper-Free Click Chemistry

(2008) Julian A. Codelli et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

A chemical method for fast and sensitive detection of DNA synthesis in vivo

(2008) A. Salic et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Exploring RNA transcription and turnover in vivo by using click chemistry

(2008) C. Y. Jao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA