In vivoexpression technology and 5′ end mapping of theBorrelia burgdorferitranscriptome identify novel RNAs expressed during mammalian infection

Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq)

(2016) Julia Babski et al.   BMC GENOMICS

Gene bb0318 Is Critical for the Oxidative Stress Response and Infectivity of Borrelia burgdorferi

(2016) Adrienne C. Showman et al.   INFECTION AND IMMUNITY

The complexity of bacterial transcriptomes

(2016) D. Stazic et al.   JOURNAL OF BIOTECHNOLOGY

ABorrelia burgdorferiSurface-Exposed Transmembrane Protein Lacking Detectable Immune Responses Supports Pathogen Persistence and Constitutes a Vaccine Target

(2016) Faith Kung et al.   JOURNAL OF INFECTIOUS DISEASES

Global Tn-seq analysis of carbohydrate utilization and vertebrate infectivity of Borrelia burgdorferi

(2016) Erin B. Troy et al.   MOLECULAR MICROBIOLOGY

Dual RNA-seq unveils noncoding RNA functions in host–pathogen interactions

(2016) Alexander J. Westermann et al.   NATURE

Term-seq reveals abundant ribo-regulation of antibiotics resistance in bacteria

(2016) D. Dar et al.   SCIENCE

In Vivo Imaging Demonstrates That Borrelia burgdorferi ospC Is Uniquely Expressed Temporally and Spatially throughout Experimental Infection

(2016) Jonathan T. Skare et al.   PLoS One

RNA-Seq of Borrelia burgdorferi in Multiple Phases of Growth Reveals Insights into the Dynamics of Gene Expression, Transcriptome Architecture, and Noncoding RNAs

(2016) William K. Arnold et al.   PLoS One

Single nucleotide resolution RNA-seq uncovers new regulatory mechanisms in the opportunistic pathogen Streptococcus agalactiae

(2015) Isabelle Rosinski-Chupin et al.   BMC GENOMICS

Ecology and Epidemiology of Lyme Borreliosis

(2015) Anna M. Schotthoefer et al.   CLINICS IN LABORATORY MEDICINE

Molecular Dissection of a Borrelia burgdorferiIn VivoEssential Purine Transport System

(2015) Sunny Jain et al.   INFECTION AND IMMUNITY

Cyclic di-GMP Modulates Gene Expression in Lyme Disease Spirochetes at the Tick-Mammal Interface To Promote Spirochete Survival during the Blood Meal and Tick-to-Mammal Transmission

(2015) Melissa J. Caimano et al.   INFECTION AND IMMUNITY

Differential RNA-seq ofVibrio choleraeidentifies the VqmR small RNA as a regulator of biofilm formation

(2015) Kai Papenfort et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptomic Profiling of Yersinia pseudotuberculosis Reveals Reprogramming of the Crp Regulon by Temperature and Uncovers Crp as a Master Regulator of Small RNAs

(2015) Aaron M. Nuss et al.   PLoS Genetics

Leaderless Transcripts and Small Proteins Are Common Features of the Mycobacterial Translational Landscape

(2015) Scarlet S. Shell et al.   PLoS Genetics

The Borrelia burgdorferi RelA/SpoT Homolog and Stringent Response Regulate Survival in the Tick Vector and Global Gene Expression during Starvation

(2015) Dan Drecktrah et al.   PLoS Pathogens

The Intraperitoneal Transcriptome of the Opportunistic Pathogen Enterococcus faecalis in Mice

(2015) Cécile Muller et al.   PLoS One

A phylogenomic and molecular marker based proposal for the division of the genus Borrelia into two genera: the emended genus Borrelia containing only the members of the relapsing fever Borrelia, and the genus Borreliella gen. nov. containing the members of the Lyme disease Borrelia (Borrelia burgdorferi sensu lato complex)

(2014) Mobolaji Adeolu et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

BorreliaBase: a phylogeny-centered browser of Borrelia genomes

(2014) Lia Di et al.   BMC BIOINFORMATICS

Global Transcriptional Start Site Mapping Using Differential RNA Sequencing Reveals Novel Antisense RNAs in Escherichia coli

(2014) Maureen K. Thomason et al.   JOURNAL OF BACTERIOLOGY

Stage-specific global alterations in the transcriptomes of Lyme disease spirochetes during tick feeding and following mammalian host adaptation

(2014) Radha Iyer et al.   MOLECULAR MICROBIOLOGY

Correction: In Vivo Expression Technology Identifies a Novel Virulence Factor Critical for Borrelia burgdorferi Persistence in Mice

(2014)   PLoS Pathogens

NextGenMap: fast and accurate read mapping in highly polymorphic genomes

(2013) Fritz J. Sedlazeck et al.   BIOINFORMATICS

Posttranscriptional Self-Regulation by the Lyme Disease Bacterium's BpuR DNA/RNA-Binding Protein

(2013) B. L. Jutras et al.   JOURNAL OF BACTERIOLOGY

Determination of sRNA Expressions by RNA-seq in Yersinia pestis Grown In Vitro and during Infection

(2013) Yanfeng Yan et al.   PLoS One

Sequence, biophysical, and structural analyses of the PstS lipoprotein (BB0215) fromBorrelia burgdorferireveal a likely binding component of an ABC-type phosphate transporter

(2013) Chad A. Brautigam et al.   PROTEIN SCIENCE

Evidence for an ABC-Type Riboflavin Transporter System in Pathogenic Spirochetes

(2013) R. K. Deka et al.   mBio

Genome-wide Mapping of Transcriptional Start Sites Defines an Extensive Leaderless Transcriptome in Mycobacterium tuberculosis

(2013) Teresa Cortes et al.   Cell Reports

High-Resolution Transcriptome Maps Reveal Strain-Specific Regulatory Features of Multiple Campylobacter jejuni Isolates

(2013) Gaurav Dugar et al.   PLoS Genetics

Borrelia burgdorferi Harbors a Transport System Essential for Purine Salvage and Mammalian Infection

(2012) Sunny Jain et al.   INFECTION AND IMMUNITY

Comparative transcriptomics of pathogenic and non-pathogenic Listeria species

(2012) Omri Wurtzel et al.   Molecular Systems Biology

Bacterial RNA thermometers: molecular zippers and switches

(2012) Jens Kortmann et al.   NATURE REVIEWS MICROBIOLOGY

Of ticks, mice and men: understanding the dual-host lifestyle of Lyme disease spirochaetes

(2012) Justin D. Radolf et al.   NATURE REVIEWS MICROBIOLOGY

Analysis of an Ordered, Comprehensive STM Mutant Library in Infectious Borrelia burgdorferi: Insights into the Genes Required for Mouse Infectivity

(2012) Tao Lin et al.   PLoS One

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium

(2012) C. Kroger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Selective Translation of Leaderless mRNAs by Specialized Ribosomes Generated by MazF in Escherichia coli

(2011) Oliver Vesper et al.   CELL

RNA-Seq-Based Monitoring of Infection-Linked Changes in Vibrio cholerae Gene Expression

(2011) Anjali Mandlik et al.   Cell Host & Microbe

The Riboswitch Regulates a Thiamine Pyrophosphate ABC Transporter of the Oral Spirochete Treponema denticola

(2011) J. Bian et al.   JOURNAL OF BACTERIOLOGY

CheY3 of Borrelia burgdorferi Is the Key Response Regulator Essential for Chemotaxis and Forms a Long-Lived Phosphorylated Intermediate

(2011) M. A. Motaleb et al.   JOURNAL OF BACTERIOLOGY

Borrelia burgdorferi Requires Glycerol for Maximum Fitness During The Tick Phase of the Enzootic Cycle

(2011) Christopher J. Pappas et al.   PLoS Pathogens

Cyclic di-GMP is Essential for the Survival of the Lyme Disease Spirochete in Ticks

(2011) Ming He et al.   PLoS Pathogens

Gene Regulation inBorrelia burgdorferi

(2010) D. Scott Samuels   Annual Review of Microbiology

Insights intoStreptococcus pyogenespathogenesis from transcriptome studies

(2010) Tomas Fiedler et al.   Future Microbiology

Host–microbe interaction systems biology: lifecycle transcriptomics and comparative genomics

(2010) Daniel E Sturdevant et al.   Future Microbiology

A Novel cdsAB Operon Is Involved in the Uptake of L-Cysteine and Participates in the Pathogenesis of Yersinia ruckeri

(2010) J. Mendez et al.   JOURNAL OF BACTERIOLOGY

Defining the Plasmid-Borne Restriction-Modification Systems of the Lyme Disease Spirochete Borrelia burgdorferi

(2010) R. O. M. Rego et al.   JOURNAL OF BACTERIOLOGY

Analysis of a Borrelia burgdorferi phosphodiesterase demonstrates a role for cyclic-di-guanosine monophosphate in motility and virulence

(2010) Syed Z. Sultan et al.   MOLECULAR MICROBIOLOGY

The primary transcriptome of the major human pathogen Helicobacter pylori

(2010) Cynthia M. Sharma et al.   NATURE

Identification of regulatory RNAs in Bacillus subtilis

(2010) Irnov Irnov et al.   NUCLEIC ACIDS RESEARCH

Screening of In Vivo Activated Genes in Enterococcus faecalis during Insect and Mouse Infections and Growth in Urine

(2010) Aurelie Hanin et al.   PLoS One

Riboswitch RNAs: Regulation of gene expression by direct monitoring of a physiological signal

(2010) Angela M. Smith et al.   RNA Biology

Chitobiose utilization in Borrelia burgdorferi is dually regulated by RpoD and RpoS

(2009) Ryan G Rhodes et al.   BMC MICROBIOLOGY

GuaA and GuaB Are Essential for Borrelia burgdorferi Survival in the Tick-Mouse Infection Cycle

(2009) M. W. Jewett et al.   JOURNAL OF BACTERIOLOGY

Borrelia burgdorferi bb0426encodes a 2′-deoxyribosyltransferase that plays a central role in purine salvage

(2009) Kevin A. Lawrence et al.   MOLECULAR MICROBIOLOGY

Northern blot analysis for detection and quantification of RNA in pancreatic cancer cells and tissues

(2009) Sylvia Streit et al.   Nature Protocols

Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli

(2009) Alfredo Mendoza-Vargas et al.   PLoS One

A Chromosomally Encoded Virulence Factor Protects the Lyme Disease Pathogen against Host-Adaptive Immunity

(2009) Xiuli Yang et al.   PLoS Pathogens

Biology of Infection with Borrelia burgdorferi

(2008) Kit Tilly et al.   INFECTIOUS DISEASE CLINICS OF NORTH AMERICA

Reciprocal Expression of ospA and ospC in Single Cells of Borrelia burgdorferi

(2008) S. Y. Srivastava et al.   JOURNAL OF BACTERIOLOGY

The identity of the transcription +1 position is crucial for changes in gene expression in response to amino acid starvation inBacillus subtilis

(2008) Libor Krásný et al.   MOLECULAR MICROBIOLOGY

Riboswitches in Eubacteria Sense the Second Messenger Cyclic Di-GMP

(2008) N. Sudarsan et al.   SCIENCE