Weighted enrichment method for prediction of transcription regulators from transcriptome and global chromatin immunoprecipitation data
出版年份 2016 全文链接
标题
Weighted enrichment method for prediction of transcription regulators from transcriptome and global chromatin immunoprecipitation data
作者
关键词
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出版物
NUCLEIC ACIDS RESEARCH
Volume 44, Issue 11, Pages 5010-5021
出版商
Oxford University Press (OUP)
发表日期
2016-05-01
DOI
10.1093/nar/gkw355
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Methods of integrating data to uncover genotype–phenotype interactions
- (2015) Marylyn D. Ritchie et al. NATURE REVIEWS GENETICS
- Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
- (2015) Erik Arner et al. SCIENCE
- Genomic analysis of LPS-stimulated myeloid cells identifies a common pro-inflammatory response but divergent IL-10 anti-inflammatory responses
- (2015) Andrew Paul Hutchins et al. Scientific Reports
- An Ultrasensitive Mechanism Regulates Influenza Virus-Induced Inflammation
- (2015) Jason E. Shoemaker et al. PLoS Pathogens
- Polycomb Potentiates Meis2 Activation in Midbrain by Mediating Interaction of the Promoter with a Tissue-Specific Enhancer
- (2014) Takashi Kondo et al. DEVELOPMENTAL CELL
- ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs
- (2014) P. J. Balwierz et al. GENOME RESEARCH
- An atlas of active enhancers across human cell types and tissues
- (2014) Robin Andersson et al. NATURE
- STRING v10: protein–protein interaction networks, integrated over the tree of life
- (2014) Damian Szklarczyk et al. NUCLEIC ACIDS RESEARCH
- Dynamic regulation of genome-wide pre-mRNA splicing and stress tolerance by the Sm-like protein LSm5 in Arabidopsis
- (2014) Peng Cui et al. GENOME BIOLOGY
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- CDK8 Kinase Phosphorylates Transcription Factor STAT1 to Selectively Regulate the Interferon Response
- (2013) Joanna Bancerek et al. IMMUNITY
- JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles
- (2013) Anthony Mathelier et al. NUCLEIC ACIDS RESEARCH
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Metazoan promoters: emerging characteristics and insights into transcriptional regulation
- (2012) Boris Lenhard et al. NATURE REVIEWS GENETICS
- The UCSC Genome Browser database: extensions and updates 2013
- (2012) Laurence R. Meyer et al. NUCLEIC ACIDS RESEARCH
- STAT3 Negatively Regulates Type I IFN-Mediated Antiviral Response
- (2011) W.-B. Wang et al. JOURNAL OF IMMUNOLOGY
- lincRNAs act in the circuitry controlling pluripotency and differentiation
- (2011) Mitchell Guttman et al. NATURE
- Generation of mouse ES cell lines engineered for the forced induction of transcription factors
- (2011) Lina S. Correa-Cerro et al. Scientific Reports
- ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments
- (2010) Alexander Lachmann et al. BIOINFORMATICS
- Cyclin T1/CDK9 Interacts with Influenza A Virus Polymerase and Facilitates Its Association with Cellular RNA Polymerase II
- (2010) J. Zhang et al. JOURNAL OF VIROLOGY
- GAGE: generally applicable gene set enrichment for pathway analysis
- (2009) Weijun Luo et al. BMC BIOINFORMATICS
- Uncovering Early Response of Gene Regulatory Networks in ESCs by Systematic Induction of Transcription Factors
- (2009) Akira Nishiyama et al. Cell Stem Cell
- Enhancers: The abundance and function of regulatory sequences beyond promoters
- (2009) Michael Bulger et al. DEVELOPMENTAL BIOLOGY
- Gene-set approach for expression pattern analysis
- (2008) D. Nam et al. BRIEFINGS IN BIOINFORMATICS
- The cohesin complex and its roles in chromosome biology
- (2008) J.-M. Peters et al. GENES & DEVELOPMENT
- UniPROBE: an online database of protein binding microarray data on protein-DNA interactions
- (2008) D. E. Newburger et al. NUCLEIC ACIDS RESEARCH
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